RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 INSIG2Q9Y5U4 225 aa10.42□□□□□ -0.74
VPS13D-205ENST00000473099 MINOS1-NBL1R4GNA1 71 aa10.42□□□□□ -0.74
VPS13D-205ENST00000473099 FAM157AC9JC47 383 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 H7C2Y5 167 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 GPR137BO60478 399 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 CXCL2P19875 107 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 GATA3P23771 443 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 LINC00205P59089 165 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 VAMP2P63027 116 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 MIDNQ504T8 468 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 GPR157Q5UAW9 335 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 CCDC144NLQ6NUI1 221 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 LHX4Q969G2 390 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 FLYWCH2Q96CP2 140 aaKnown RBP10.41□□□□□ -0.74
VPS13D-205ENST00000473099 C1orf159Q96HA4 380 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 RHOVQ96L33 236 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 ARL6Q9H0F7 186 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 LPAR2Q9HBW0 351 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 OR5AC2Q9NZP5 309 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 ZNRD1Q9P1U0 126 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 RCL1Q9Y2P8 373 aaKnown RBP10.41□□□□□ -0.74
VPS13D-205ENST00000473099 TBL2Q9Y4P3 447 aaKnown RBP10.41□□□□□ -0.74
VPS13D-205ENST00000473099 APCP25054 2843 aa10.41□□□□□ -0.74
VPS13D-205ENST00000473099 TRAV20A0A0B4J274 112 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 KANTRA0A1W2PQU2 76 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 RNF222A6NCQ9 220 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 B4DSR2 109 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 LY6LH3BQJ8 138 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 SHOXO15266 292 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 HOXB4P17483 251 aaPredicted RBP10.4□□□□□ -0.74
VPS13D-205ENST00000473099 UBE2E1P51965 193 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 LGALS4P56470 323 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 TAS2R30P59541 319 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 KRTAP10-9P60411 292 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 RPL23AP62750 156 aaKnown RBP10.4□□□□□ -0.74
VPS13D-205ENST00000473099 PAX8Q06710 450 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 OPCMLQ14982 345 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 AARDQ4LEZ3 155 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 CXorf66Q5JRM2 361 aaPredicted RBP10.4□□□□□ -0.74
VPS13D-205ENST00000473099 TPTE2P1Q5T6R2 138 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 Q6ZRM9 215 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 OR4A16Q8NH70 328 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 VSTM2AQ8TAG5 236 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 SLC25A31Q9H0C2 315 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 MMP26Q9NRE1 261 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 PLSCR3Q9NRY6 295 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 TMEM140Q9NV12 185 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 HSPB7Q9UBY9 170 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 BOLA1Q9Y3E2 137 aa10.4□□□□□ -0.74
VPS13D-205ENST00000473099 TACC2O95359 2948 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 IGHV1-3A0A0C4DH29 117 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 TAAR5O14804 337 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 SYNGR2O43760 224 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 RBMXL2O75526 392 aaKnown RBP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 SCAF4O95104 1147 aaKnown RBP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 MSMBP08118 114 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 FGF2P09038 288 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 RPL12P30050 165 aaKnown RBP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 LGALS7P47929 136 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 REG1BP48304 166 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 POLR2GP62487 172 aaKnown RBP eCLIP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 TNFRSF9Q07011 255 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 LOXL1Q08397 574 aaPredicted RBP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 HCP5Q6MZN7 132 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 ZNF429Q86V71 674 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 OR52E5Q8NH55 327 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 OR4A5Q8NH83 315 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 HARBI1Q96MB7 349 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 CIB3Q96Q77 187 aaPredicted RBP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 RNF5Q99942 180 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 C11orf1Q9H5F2 150 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 ZC4H2Q9NQZ6 224 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 FKBP11Q9NYL4 201 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 BET1LQ9NYM9 111 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 WSB1Q9Y6I7 421 aa10.39□□□□□ -0.75
VPS13D-205ENST00000473099 PRRC2AP48634 2157 aaKnown RBP10.39□□□□□ -0.75
VPS13D-205ENST00000473099 RNASEK-C17orf49H0YIS7 233 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 RGS13O14921 159 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 BCL2L11O43521 198 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 SSSCA1O60232 199 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 AP2S1P53680 142 aaPredicted RBP10.38□□□□□ -0.75
VPS13D-205ENST00000473099 EIF5AP63241 154 aaKnown RBP10.38□□□□□ -0.75
VPS13D-205ENST00000473099 PDLIM3Q53GG5 364 aaPredicted RBP10.38□□□□□ -0.75
VPS13D-205ENST00000473099 OR4A47Q6IF82 309 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 SSX9Q7RTT3 188 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 SLC51BQ86UW2 128 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 OR2C3Q8N628 320 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 SMIM8Q96KF7 97 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 CLCC1Q96S66 551 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 TBX15Q96SF7 602 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 TSNAXQ99598 290 aaKnown RBP10.38□□□□□ -0.75
VPS13D-205ENST00000473099 ARPC5LQ9BPX5 153 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 MS4A7Q9GZW8 240 aaPredicted RBP10.38□□□□□ -0.75
VPS13D-205ENST00000473099 LYRM2Q9NU23 88 aaPredicted RBP10.38□□□□□ -0.75
VPS13D-205ENST00000473099 ITGB1BP2Q9UKP3 347 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 PRNDQ9UKY0 176 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 CREBBPQ92793 2442 aa10.38□□□□□ -0.75
VPS13D-205ENST00000473099 OTOGQ6ZRI0 2925 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 C15orf61A6NNL5 157 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 CHST1O43916 411 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms