RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 ACTL10Q5JWF8 245 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SLC25A34Q6PIV7 304 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 DEGS2Q6QHC5 323 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 TBPL2Q6SJ96 375 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 C5orf46Q6UWT4 87 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 RASSF6Q6ZTQ3 369 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 AHSA2Q719I0 299 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 PRNTQ86SH4 94 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 GID4Q8IVV7 300 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 LYPD1Q8N2G4 141 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CLDN22Q8N7P3 220 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 TMEM105Q8N8V8 129 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SPERTQ8NA61 448 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 OR7G1Q8NGA0 311 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 OR4C6Q8NH72 309 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 LGALS14Q8TCE9 139 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 LMX1AQ8TE12 382 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 C22orf15Q8WYQ4 148 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 AP3S1Q92572 193 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 RAB8BQ92930 207 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 TAMM41Q96BW9 452 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 C12orf43Q96C57 262 aaKnown RBP2.33□□□□□ -2.04
VPS41-210ENST00000462429 ZHX1-C8orf76Q96EF9 292 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SMIM8Q96KF7 97 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CEP19Q96LK0 163 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 OR7D2Q96RA2 312 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SDF2Q99470 211 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 MND1Q9BWT6 205 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CDCA4Q9BXL8 241 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 ULBP2Q9BZM5 246 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 IFT46Q9NQC8 304 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SDHAF3Q9NRP4 125 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 ENPP5Q9UJA9 477 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SSR3Q9UNL2 185 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 SLC35A3Q9Y2D2 325 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 MED31Q9Y3C7 131 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 CCDC88CQ9P219 2028 aa2.33□□□□□ -2.04
VPS41-210ENST00000462429 GPR179Q6PRD1 2367 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ATG2BQ96BY7 2078 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 IGLV3-12A0A075B6K2 115 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 IGHV1-3A0A0C4DH29 117 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 IGKV1-6A0A0C4DH72 117 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 RIIAD1A6NNX1 92 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CEACAM18A8MTB9 384 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 EFCAB9A8MZ26 197 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CENPBD1B2RD01 187 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 RPL36A-HNRNPH2H7BZ11 118 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 LGALS9O00182 355 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CHP2O43745 196 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 PFDN1O60925 122 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 SCO1O75880 301 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 RAB36O95755 333 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 IGF2P01344 180 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 TSPAN19P0C672 248 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ZNF3P17036 446 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 F8A1P23610 371 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 IL12BP29460 328 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CD40LGP29965 261 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 PEBP1P30086 187 aaKnown RBP2.32□□□□□ -2.04
VPS41-210ENST00000462429 GABRA3P34903 492 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 UGT2B10P36537 528 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 BLVRAP53004 296 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 MLLT11Q13015 90 aaPredicted RBP2.32□□□□□ -2.04
VPS41-210ENST00000462429 VAMP3Q15836 100 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 RGS21Q2M5E4 152 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ZNF404Q494X3 552 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CDNFQ49AH0 187 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.32□□□□□ -2.04
VPS41-210ENST00000462429 NXNL2Q5VZ03 156 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 VN1R4Q7Z5H5 301 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 HS3ST5Q8IZT8 346 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 SLC25A29Q8N8R3 303 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 OR2M7Q8NG81 312 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 OR5D16Q8NGK9 328 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 OR51Q1Q8NH59 317 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CCL4L1Q8NHW4 92 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ZFAND1Q8TCF1 268 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 C17orf50Q8WW18 174 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CLDN23Q96B33 292 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ZFP3Q96NJ6 502 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 MGLLQ99685 303 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 NIPSNAP1Q9BPW8 284 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 DCUN1D5Q9BTE7 237 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 CHCHD7Q9BUK0 85 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 TBL1XR1Q9BZK7 514 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 SLC19A3Q9BZV2 496 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 PLEKHF2Q9H8W4 249 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 PLEKHA1Q9HB21 404 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 TREM1Q9NP99 234 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 UBQLN4Q9NRR5 601 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 IL20Q9NYY1 176 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 TVP23BQ9NYZ1 205 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ANXA10Q9UJ72 324 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 RAB22AQ9UL26 194 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 ZNF443Q9Y2A4 671 aaPredicted RBP2.32□□□□□ -2.04
VPS41-210ENST00000462429 PCYT1BQ9Y5K3 369 aaPredicted RBP2.32□□□□□ -2.04
VPS41-210ENST00000462429 DSPPQ9NZW4 1301 aa2.32□□□□□ -2.04
VPS41-210ENST00000462429 MDC1Q14676 2089 aaKnown RBP2.32□□□□□ -2.04
VPS41-210ENST00000462429 BRCA2P51587 3418 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 NINQ8N4C6 2090 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms