RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 RAI1Q7Z5J4 1906 aaPredicted RBP11.25□□□□□ -0.61
CLK3-203ENST00000454830 SNCAP37840 140 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 FGF8P55075 233 aaPredicted RBP11.25□□□□□ -0.61
CLK3-203ENST00000454830 HIPK2Q9H2X6 1198 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 SLC35D1Q9NTN3 355 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 LINC00312Q9Y6C7 94 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 FAM74A7A6NL05 159 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 C9JQL5 133 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 WNT2P09544 360 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 FAM74A3Q4VXF1 159 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 C1orf229Q6ZS94 237 aaPredicted RBP11.25□□□□□ -0.61
CLK3-203ENST00000454830 TCF23Q7RTU1 214 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 HAPLN4Q86UW8 402 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 TOLLIPQ9H0E2 274 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 COA4Q9NYJ1 87 aa11.25□□□□□ -0.61
CLK3-203ENST00000454830 RPUSD1Q9UJJ7 312 aaKnown RBP11.25□□□□□ -0.61
CLK3-203ENST00000454830 FGF7P21781 194 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 THBS3P49746 956 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 CCL20P78556 96 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 PAX5Q02548 391 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 TMEM200BQ69YZ2 307 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 RARRES2Q99969 163 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 ZFP92A6NM28 416 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 SNAPINO95295 136 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 OR8U8P0C7N1 319 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 EIF4EBP1Q13541 118 aaPredicted RBP11.24□□□□□ -0.61
CLK3-203ENST00000454830 RTL8BQ17RB0 113 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 GNG13Q9P2W3 67 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 SPG11Q96JI7 2443 aa11.24□□□□□ -0.61
CLK3-203ENST00000454830 COL8A2P25067 703 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 DLX1P56177 255 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 CBLN2Q8IUK8 224 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 ZNF383Q8NA42 475 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 RXFP4Q8TDU9 374 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 VSIRQ9H7M9 311 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 ENSAO43768 121 aaKnown RBP11.23□□□□□ -0.61
CLK3-203ENST00000454830 SNRNP70P08621 437 aaKnown RBP11.23□□□□□ -0.61
CLK3-203ENST00000454830 CGB3P0DN86 165 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 CGB7P0DN87 165 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 NPBWR1P48145 328 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 ABHD12Q8N2K0 398 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 RPRMQ9NS64 109 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 MYOD1P15172 320 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 KIR2DS2P43631 304 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 PINX1Q96BK5 328 aaKnown RBP11.23□□□□□ -0.61
CLK3-203ENST00000454830 RAB39BQ96DA2 213 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 SEC11CQ9BY50 192 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 CTSZQ9UBR2 303 aa11.23□□□□□ -0.61
CLK3-203ENST00000454830 PUS1Q9Y606 427 aaKnown RBP eCLIP11.23□□□□□ -0.61
CLK3-203ENST00000454830 PPIHO43447 177 aaKnown RBP11.22□□□□□ -0.61
CLK3-203ENST00000454830 APOA2P02652 100 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 LFNGQ8NES3 379 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 TAF15Q92804 592 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLK3-203ENST00000454830 SEBOXQ9HB31 216 aaPredicted RBP11.22□□□□□ -0.61
CLK3-203ENST00000454830 RPS10P5Q9NQ39 176 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 ABCA1O95477 2261 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 TANC2Q9HCD6 1990 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 LRBAP50851 2863 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 HRASP01112 189 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 DAOP14920 347 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 CR1LQ2VPA4 569 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 ETV3LQ6ZN32 361 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 OR13D1Q8NGV5 346 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 ADTRPQ96IZ2 230 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 TMEM147Q9BVK8 224 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 OR4A47Q6IF82 309 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 WDR61Q9GZS3 305 aaKnown RBP11.22□□□□□ -0.61
CLK3-203ENST00000454830 SLC39A9Q9NUM3 307 aa11.22□□□□□ -0.61
CLK3-203ENST00000454830 ZNF787Q6DD87 383 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 TMEM14EPQ6UXP3 125 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 MRPL20Q9BYC9 149 aaKnown RBP11.21□□□□□ -0.61
CLK3-203ENST00000454830 TCF19Q9Y242 345 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 IGHV3-72A0A0B4J1Y9 119 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 SIAH2O43255 324 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 IGKV1-16P04430 117 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 COX7A1P24310 79 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 SPCS3P61009 180 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 RPP30P78346 268 aaKnown RBP11.21□□□□□ -0.61
CLK3-203ENST00000454830 MEF2CQ06413 473 aaPredicted RBP11.21□□□□□ -0.61
CLK3-203ENST00000454830 SOHLH1Q5JUK2 328 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 COMMD1Q8N668 190 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 SLC25A22Q9H936 323 aa11.21□□□□□ -0.61
CLK3-203ENST00000454830 ZFYVE26Q68DK2 2539 aa11.21□□□□□ -0.62
CLK3-203ENST00000454830 HBE1P02100 147 aa11.21□□□□□ -0.62
CLK3-203ENST00000454830 TFF3Q07654 80 aa11.21□□□□□ -0.62
CLK3-203ENST00000454830 LRRC75BQ2VPJ9 315 aa11.21□□□□□ -0.62
CLK3-203ENST00000454830 RBFOX3A6NFN3 312 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 FBP1P09467 338 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 PLA2G5P39877 138 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 HARBI1Q96MB7 349 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 KPTNQ9Y664 436 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 ARHGAP32A7KAX9 2087 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 DSCAML1Q8TD84 2053 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 PLXNB1O43157 2135 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 CD5P06127 495 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 ZNF672Q499Z4 452 aaPredicted RBP11.2□□□□□ -0.62
CLK3-203ENST00000454830 FFAR4Q5NUL3 377 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 FAM122CQ6P4D5 195 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 HEPN1Q6WQI6 88 aa11.2□□□□□ -0.62
CLK3-203ENST00000454830 P0C879 139 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms