RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TSTD1Q8NFU3 115 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 OR1L1Q8NH94 360 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 GPR146Q96CH1 333 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 PHYHIPLQ96FC7 376 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 CAPZA3Q96KX2 299 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 SOSTQ9BQB4 213 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF702PQ9H963 129 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ITSN2Q9NZM3 1697 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 GLI3P10071 1580 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 A0A087X002 238 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 A0A1W2PRE2 83 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 PRORSD1PA6NEY8 169 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 MIF4GDA9UHW6 222 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 B8ZZF3 427 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 CLDN25C9JDP6 229 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 OR2J2O76002 312 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GPR75O95800 540 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 INSP01308 110 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 HSPB1P04792 205 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 RBP1P09455 135 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF806P0C7X5 589 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 PRB4P10163 310 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 SDC4P31431 198 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 LINC00205P59089 165 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GLT8D1Q68CQ7 371 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 C20orf203Q8NBC4 194 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GPR119Q8TDV5 335 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GTSF1Q8WW33 167 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 MS4A6EQ96DS6 147 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 REEP6Q96HR9 211 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 MMP26Q9NRE1 261 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 RASL12Q9NYN1 266 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 NUBP2Q9Y5Y2 271 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 PLXNC1O60486 1568 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 A0A1B0GUV1 79 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHMP01871 453 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 CRISP2P16562 243 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 OR10J1P30954 320 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 RSPO1Q2MKA7 263 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM78Q5T7P6 136 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 PRIMA1Q86XR5 153 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 NPBQ8NG41 125 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 SLC25A40Q8TBP6 338 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF689Q96CS4 500 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 AP1S3Q96PC3 154 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 WFDC1Q9HC57 220 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 RBM7Q9Y580 266 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 SSC5DA1L4H1 1573 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 BRCA1P38398 1863 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 TRAV9-1A0A075B6T8 112 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 A0A087WWV3 80 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 KRTAP16-1A8MUX0 517 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 C4orf51C9J302 202 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 C5orf58C9J3I9 102 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 M0R381 172 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF432O94892 652 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GADD45GO95257 159 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 FAM107AO95990 144 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV3-13P01766 116 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GYPCP04921 128 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF705DP0CH99 300 aaPredicted RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 GZMHP20718 246 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 HBA1P69905 142 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 MRPS21P82921 87 aaKnown RBP1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF616Q08AN1 781 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 HTR4Q13639 388 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZFAND6Q6FIF0 208 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ALKAL1Q6UXT8 129 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 LINC00337Q8N6G1 96 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 DCAF4L2Q8NA75 395 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 KLHL30-AS1Q8NEE0 82 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 OR8J3Q8NGG0 315 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 OR9A2Q8NGT5 310 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 C16orf74Q96GX8 76 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 LINC00479Q96M42 142 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 LYSMD1Q96S90 227 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 LITAFQ99732 161 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 OR2D2Q9H210 308 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 HMG20AQ9NP66 347 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF581Q9P0T4 197 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 RPS6KB2Q9UBS0 482 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 LAMTOR3Q9UHA4 124 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 MYOM2P54296 1465 aa1.72□□□□□ -2.13
CCDC88A-208ENST00000444458 SCAPERQ9BY12 1400 aa1.71□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF98A6NK75 572 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TRAPPC2LH3BP13 241 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 H3BSA7 217 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 UBE2L6O14933 153 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 NDUFA2O43678 99 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 EDIL3O43854 480 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF140P52738 457 aaPredicted RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 IBA57Q5T440 356 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 MRPL2Q5T653 305 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 AGTRAPQ6RW13 159 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 OSR2Q8N2R0 312 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 SLC25A29Q8N8R3 303 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 RAB2BQ8WUD1 216 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM158Q8WZ71 300 aa1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 EXOSC8Q96B26 276 aaKnown RBP1.71□□□□□ -2.14
CCDC88A-208ENST00000444458 GPR82Q96P67 336 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms