RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SRRM4A7MD48 611 aaKnown RBP12.58□□□□□ -0.4
USP40-206ENST00000443711 INMT-MINDY4F8WBC2 141 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 RRHO14718 337 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 CHST1O43916 411 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 ATG12O94817 140 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 S1PR2O95136 353 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 NDUFA3O95167 84 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 SFT2D2O95562 160 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 IGLV2-23P01705 113 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 NQO2P16083 231 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 MECP2P51608 486 aaKnown RBP12.58□□□□□ -0.4
USP40-206ENST00000443711 RAG2P55895 527 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 RPL15P61313 204 aaKnown RBP12.58□□□□□ -0.4
USP40-206ENST00000443711 PPP1R1AQ13522 171 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 TMEM187Q14656 261 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 TRIM16LQ309B1 348 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 C4orf46Q504U0 113 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 ZFAND2BQ8WV99 257 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 BEX1Q9HBH7 125 aa12.58□□□□□ -0.4
USP40-206ENST00000443711 SETD2Q9BYW2 2564 aaPredicted RBP12.58□□□□□ -0.4
USP40-206ENST00000443711 JMJD1CQ15652 2540 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 C9orf170A2RU37 121 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 SLC25A17O43808 307 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 CDS2O95674 445 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 CRYBA1P05813 215 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 SPNP16150 400 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 RAB25P57735 213 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 UBE2KP61086 200 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 ERVK-16P61578 105 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 SRPXP78539 464 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 C5orf64Q2M2E5 130 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 LYG2Q86SG7 212 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 Q8N9W7 124 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 TEX45Q8NA69 505 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 R3HDM4Q96D70 268 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 RHOVQ96L33 236 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 RASL11BQ9BPW5 248 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 MARVELD1Q9BSK0 173 aa12.57□□□□□ -0.4
USP40-206ENST00000443711 METTL1Q9UBP6 276 aaKnown RBP12.57□□□□□ -0.4
USP40-206ENST00000443711 PIGBOS1A0A0B4J2F0 54 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 FAM181BA6NEQ2 426 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 DHFRP00374 187 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 HLA-AP01891 365 aaKnown RBP12.56□□□□□ -0.4
USP40-206ENST00000443711 IL5P05113 134 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 DHRS2Q13268 280 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 PLGLAQ15195 96 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 POU2AF1Q16633 256 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 ZNF695Q8IW36 515 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 LGI3Q8N145 548 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 FAM71E2Q8N5Q1 922 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 C5orf56Q8N8D9 126 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 DMBX1Q8NFW5 382 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 VSTM2AQ8TAG5 236 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 CASTOR1Q8WTX7 329 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 IL22RA2Q969J5 263 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 TMEM56Q96MV1 263 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 NPFFR1Q9GZQ6 430 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 FBXL15Q9H469 300 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 TMEM56-RWDD3S4R434 201 aa12.56□□□□□ -0.4
USP40-206ENST00000443711 MARCH11A6NNE9 402 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 PRAF2O60831 178 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 OR2A4O95047 310 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 KRASP01116 189 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 IGKV1-39P01597 117 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 IGKV1D-39P04432 117 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 CRYGBP07316 175 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 SAA1P0DJI8 122 aaPredicted RBP12.55□□□□□ -0.4
USP40-206ENST00000443711 G6PCP35575 357 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 TMEM268Q5VZI3 342 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 LIN54Q6MZP7 749 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 SSX9Q7RTT3 188 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 SELENOHQ8IZQ5 122 aaKnown RBP12.55□□□□□ -0.4
USP40-206ENST00000443711 VKORC1L1Q8N0U8 176 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 PUSL1Q8N0Z8 303 aaKnown RBP12.55□□□□□ -0.4
USP40-206ENST00000443711 RBPMSQ93062 196 aaKnown RBP12.55□□□□□ -0.4
USP40-206ENST00000443711 SEC22AQ96IW7 307 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 OR2A7Q96R45 310 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 PRSS22Q9GZN4 317 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 SIGLEC9Q9Y336 463 aa12.55□□□□□ -0.4
USP40-206ENST00000443711 DUS4LO95620 317 aaKnown RBP12.54□□□□□ -0.4
USP40-206ENST00000443711 AMY1AP04745 511 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 ANKRD55Q3KP44 614 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 OR4A47Q6IF82 309 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 H2BFWTQ7Z2G1 175 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 PPP1R27Q86WC6 154 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 CADM3Q8N126 398 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 LRTM2Q8N967 370 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 OR4A5Q8NH83 315 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 COQ8AQ8NI60 647 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 LHFPL5Q8TAF8 219 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 TMEM167AQ8TBQ9 72 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 ZNF431Q8TF32 576 aaPredicted RBP12.54□□□□□ -0.4
USP40-206ENST00000443711 SEC22CQ9BRL7 303 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 RANBP3Q9H6Z4 567 aaPredicted RBP12.54□□□□□ -0.4
USP40-206ENST00000443711 GPN1Q9HCN4 374 aaPredicted RBP12.54□□□□□ -0.4
USP40-206ENST00000443711 BET1LQ9NYM9 111 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 PRR13Q9NZ81 148 aa12.54□□□□□ -0.4
USP40-206ENST00000443711 TNCP24821 2201 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 A0A0B4J2A0 478 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 CREBL2O60519 120 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms