RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TRAV39A0A0B4J263 110 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 LOC100506127A0A0U1RQW1 187 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MDFIC2A0A1B0GVS7 189 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MEX3AA1L020 520 aaKnown RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF320A2RRD8 509 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 A4D1N5 150 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 FOXI3A8MTJ6 420 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 LY6LH3BQJ8 138 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 C15orf65H3BRN8 121 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 SOCS1O15524 211 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 AIREO43918 545 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 SCGNO76038 276 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 NDUFA7O95182 113 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 IGHV4-59P01825 116 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 NFYBP25208 207 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 BRS3P32247 399 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 SDC2P34741 201 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 VEGFCP49767 419 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 ARHGDIBP52566 201 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 DLX1P56177 255 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 CLDN12P56749 244 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 OR10A3P58181 314 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 ACTG1P63261 375 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 PRB3Q04118 309 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM187Q14656 261 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 HLA-DRB5Q30154 266 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 KIAA1644Q3SXP7 199 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 LBHQ53QV2 105 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 LY6G6FQ5SQ64 297 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 C12orf54Q6X4T0 127 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MOB1BQ7L9L4 216 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 LINC00311Q8N616 119 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 NHLRC2Q8NBF2 726 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 OR4P4Q8NGL7 312 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 OR10R2Q8NGX6 335 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 OR4K15Q8NH41 348 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 NDNFQ8TB73 568 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MRPL30Q8TCC3 161 aaKnown RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 RAB3CQ96E17 227 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 SSX3Q99909 188 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 SULT4A1Q9BR01 284 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 PECRQ9BY49 303 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MRPS26Q9BYN8 205 aaKnown RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 CHIAQ9BZP6 476 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 TAF9BQ9HBM6 251 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF286AQ9HBT8 521 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 RAB18Q9NP72 206 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 ABCB10Q9NRK6 738 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 PITPNC1Q9UKF7 332 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 VPREB3Q9UKI3 123 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 PSG11Q9UQ72 335 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 AMMECR1Q9Y4X0 333 aaPredicted RBP1.97□□□□□ -2.09
VPS13A-208ENST00000423463 MMP24Q9Y5R2 645 aa1.97□□□□□ -2.09
VPS13A-208ENST00000423463 AKAP9Q99996 3911 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 A0A087X002 238 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 A0A0A6YYD4 124 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 A6NDX4 124 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 SERPINE3A8MV23 424 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 C12orf77C9JDV5 145 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 BUB1B-PAK6H3BSN5 160 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 H3BUX3 64 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 SDCBPO00560 298 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-208ENST00000423463 YPEL1O60688 119 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 NAPSAO96009 420 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 HBZP02008 142 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 GAPDHP04406 335 aaKnown RBP1.96□□□□□ -2.1
VPS13A-208ENST00000423463 RLN1P04808 185 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 CD3GP09693 182 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 SLC2A2P11168 524 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-208ENST00000423463 RCC1P18754 421 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-208ENST00000423463 OMGP23515 440 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 IL3RAP26951 378 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 ALDH3B2P48448 385 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 HERV-K104P61576 105 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 MRPS15P82914 257 aaKnown RBP1.96□□□□□ -2.1
VPS13A-208ENST00000423463 HTD2P86397 168 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 HMGN3Q15651 99 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 SSX2Q16385 188 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 LDLRAD2Q5SZI1 272 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 TPTE2P1Q5T6R2 138 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 LCE1FQ5T754 118 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 OR4A47Q6IF82 309 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 SFXN4Q6P4A7 337 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF880Q6PDB4 577 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 C6orf201Q7Z4U5 140 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 LHFPL4Q7Z7J7 247 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 DYNAPQ8N1N2 210 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 OR13F1Q8NGS4 319 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 OR4F5Q8NH21 305 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 PIFOQ8TCI5 191 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 C17orf50Q8WW18 174 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 GALMQ96C23 342 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 ARHGAP5-AS1Q96IT6 56 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 YPEL2Q96QA6 119 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 CMSS1Q9BQ75 279 aaKnown RBP1.96□□□□□ -2.1
VPS13A-208ENST00000423463 NICN1Q9BSH3 213 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 FUNDC2Q9BWH2 189 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 ATG5Q9H1Y0 275 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 C16orf95Q9H693 158 aa1.96□□□□□ -2.1
VPS13A-208ENST00000423463 BEX1Q9HBH7 125 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms