RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 FBXL15Q9H469 300 aa13.49□□□□□ -0.25
COL7A1-202ENST00000422991 TPSG1Q9NRR2 321 aa13.49□□□□□ -0.25
COL7A1-202ENST00000422991 COMMD9Q9P000 198 aa13.49□□□□□ -0.25
COL7A1-202ENST00000422991 METTL1Q9UBP6 276 aaKnown RBP13.49□□□□□ -0.25
COL7A1-202ENST00000422991 TEX13DA0A0J9YY54 714 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-202ENST00000422991 SH2D7A6NKC9 451 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-202ENST00000422991 B3GALNT1O75752 331 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 CRYGBP07316 175 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 SAA1P0DJI8 122 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-202ENST00000422991 HKR1P10072 659 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 AKR1C4P17516 323 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 LPAR6P43657 344 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 RAG2P55895 527 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 TAS2R31P59538 309 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 DEFA1P59665 94 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 DEFA3P59666 94 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 UBE2KP61086 200 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 VMA21Q3ZAQ7 101 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 Q6ZS46 218 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 SGPP2Q8IWX5 399 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 CENPSQ8N2Z9 138 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 RASL11BQ9BPW5 248 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 PRSS22Q9GZN4 317 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 C20orf85Q9H1P6 137 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 FLVCR2Q9UPI3 526 aa13.48□□□□□ -0.25
COL7A1-202ENST00000422991 FAM240BA0A1B0GVZ2 78 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 ARPC1BO15143 372 aaKnown RBP13.47□□□□□ -0.25
COL7A1-202ENST00000422991 HRASP01112 189 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 HLA-DRB1P01911 266 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 TCRBP04435 133 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 OR5AC1P0C628 307 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 NQO2P16083 231 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 UCP1P25874 307 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 SUPT4H1P63272 117 aaKnown RBP13.47□□□□□ -0.25
COL7A1-202ENST00000422991 PLGLAQ15195 96 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 POU2AF1Q16633 256 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 SLC25A42Q86VD7 318 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 VKORC1L1Q8N0U8 176 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 GALNT14Q96FL9 552 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 RHOVQ96L33 236 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 TMEM222Q9H0R3 208 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 C16orf95Q9H693 158 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 PALMDQ9NP74 551 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 SIGLEC9Q9Y336 463 aa13.47□□□□□ -0.25
COL7A1-202ENST00000422991 IGKV1-39P01597 117 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 IGKV1D-39P04432 117 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 SERPINE2P07093 398 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 RPA2P15927 270 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 UBE2MP61081 183 aaKnown RBP13.46□□□□□ -0.25
COL7A1-202ENST00000422991 DHODHQ02127 395 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 SP6Q3SY56 376 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 TMEM128Q5BJH2 165 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 C9orf152Q5JTZ5 239 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 PUSL1Q8N0Z8 303 aaKnown RBP13.46□□□□□ -0.25
COL7A1-202ENST00000422991 TEX45Q8NA69 505 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 OR4F5Q8NH21 305 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 ENKURQ8TC29 256 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 R3HDM4Q96D70 268 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 AIFM2Q9BRQ8 373 aa13.46□□□□□ -0.25
COL7A1-202ENST00000422991 MARCH11A6NNE9 402 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 MRGPRG-AS1Q2M3A8 158 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 LIN54Q6MZP7 749 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 SSX9Q7RTT3 188 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 NRARPQ7Z6K4 114 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 PPP1R27Q86WC6 154 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 GLYATL2Q8WU03 294 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 HSPB9Q9BQS6 159 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 NUDT15Q9NV35 164 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 PLXNB1O43157 2135 aa13.45□□□□□ -0.26
COL7A1-202ENST00000422991 FCN1O00602 326 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 KBTBD11O94819 623 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 OR2A4O95047 310 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 IGHG2P01859 326 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 ANXA7P20073 488 aaKnown RBP13.44□□□□□ -0.26
COL7A1-202ENST00000422991 ERVK-16P61578 105 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 PPP1R1AQ13522 171 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 DCTN2Q13561 401 aaKnown RBP13.44□□□□□ -0.26
COL7A1-202ENST00000422991 TMEM187Q14656 261 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 TRIM16LQ309B1 348 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 TMEM95Q3KNT9 176 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 OR4A47Q6IF82 309 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 DMBX1Q8NFW5 382 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 OR2T6Q8NHC8 308 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 LINC01006Q8NI28 216 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 VSTM2AQ8TAG5 236 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 SEC22AQ96IW7 307 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 OR2A7Q96R45 310 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 TMEM140Q9NV12 185 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 BET1LQ9NYM9 111 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 KCNIP3Q9Y2W7 256 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 NUBP2Q9Y5Y2 271 aa13.44□□□□□ -0.26
COL7A1-202ENST00000422991 TNCP24821 2201 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 TRAV6A0A075B6T7 132 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 IGHV7-81A0A0B4J1V7 117 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 TMEM89A2RUT3 159 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 CDS2O95674 445 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 CA2P00918 260 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 KRASP01116 189 aa13.43□□□□□ -0.26
COL7A1-202ENST00000422991 MDKP21741 143 aaPredicted RBP13.43□□□□□ -0.26
COL7A1-202ENST00000422991 VAMP1P23763 118 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms