RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 H2BFWTQ7Z2G1 175 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 SLC25A42Q86VD7 318 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 COQ8AQ8NI60 647 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 DDB2Q92466 427 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 MRGPRFQ96AM1 343 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 RBM14Q96PK6 669 aaKnown RBP6.78□□□□□ -1.32
TRIM48-201ENST00000417545 CLCC1Q96S66 551 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 RNF5Q99942 180 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 PRDM13Q9H4Q3 707 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 FAM212BQ9NTI7 297 aaPredicted RBP6.78□□□□□ -1.32
TRIM48-201ENST00000417545 COMMD9Q9P000 198 aa6.78□□□□□ -1.32
TRIM48-201ENST00000417545 FAM90A9PA6NNJ1 464 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 INMT-MINDY4F8WBC2 141 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 PRAF2O60831 178 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 RAMP3O60896 148 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 SNAPC5O75971 98 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 CNIH1O95406 144 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 SFT2D2O95562 160 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 KRASP01116 189 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 RNASE1P07998 156 aaKnown RBP6.77□□□□□ -1.33
TRIM48-201ENST00000417545 OR4E1P0C645 316 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 PPP1R1AQ13522 171 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 EIF4EBP1Q13541 118 aaPredicted RBP6.77□□□□□ -1.33
TRIM48-201ENST00000417545 TMEM268Q5VZI3 342 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 LYG2Q86SG7 212 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 LGI3Q8N145 548 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 UXS1Q8NBZ7 420 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 TP53RKQ96S44 253 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 PHB2Q99623 299 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 PDCD10Q9BUL8 212 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 PRSS22Q9GZN4 317 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 TMEM222Q9H0R3 208 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 FBXL15Q9H469 300 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 PLEKHA2Q9HB19 425 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 TLN2Q9Y4G6 2542 aa6.77□□□□□ -1.33
TRIM48-201ENST00000417545 FAM181BA6NEQ2 426 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 MARCH11A6NNE9 402 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 CLDN34H7C241 214 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 RRHO14718 337 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 FGF16O43320 207 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 OR2A4O95047 310 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 IFNA21P01568 189 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 SAA1P0DJI8 122 aaPredicted RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 UCP1P25874 307 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 CNTFRP26992 372 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 G6PCP35575 357 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 RPL15P61313 204 aaKnown RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 EBI3Q14213 229 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 PSG5Q15238 335 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 TNXAQ16473 311 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 THOC7Q6I9Y2 204 aaKnown RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 LIN54Q6MZP7 749 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 CCBE1Q6UXH8 406 aaPredicted RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 VKORC1L1Q8N0U8 176 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 MINDY2Q8NBR6 621 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 DUSP18Q8NEJ0 188 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 OR4A16Q8NH70 328 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 RBPMSQ93062 196 aaKnown RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 TMEM230Q96A57 120 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 GALNT14Q96FL9 552 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 RHOVQ96L33 236 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 OR2A7Q96R45 310 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 RANBP3Q9H6Z4 567 aaPredicted RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 ESM1Q9NQ30 184 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 NAV3Q8IVL0 2385 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 SONP18583 2426 aaKnown RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 C9orf170A2RU37 121 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 KCNAB3O43448 404 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 SSNA1O43805 119 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 CHST1O43916 411 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 CA2P00918 260 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 F2RL1P55085 397 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 UBE2KP61086 200 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 DHRS2Q13268 280 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 C5orf64Q2M2E5 130 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 OR4A47Q6IF82 309 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 SLC35E3Q7Z769 313 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 PPP1R27Q86WC6 154 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 FOXRED2Q8IWF2 684 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 MMD2Q8IY49 270 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 Q8N6K4 173 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 C5orf56Q8N8D9 126 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 TEX45Q8NA69 505 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 NPBQ8NG41 125 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 OR4A5Q8NH83 315 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 OR2T6Q8NHC8 308 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 PIFOQ8TCI5 191 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 IL22RA2Q969J5 263 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 RBMXL1Q96E39 390 aaKnown RBP6.76□□□□□ -1.33
TRIM48-201ENST00000417545 SEC22CQ9BRL7 303 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 PARP11Q9NR21 331 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 TMEM140Q9NV12 185 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 PRR13Q9NZ81 148 aa6.76□□□□□ -1.33
TRIM48-201ENST00000417545 DUXBA0A1W2PPF3 345 aa6.75□□□□□ -1.33
TRIM48-201ENST00000417545 SH2D7A6NKC9 451 aaPredicted RBP6.75□□□□□ -1.33
TRIM48-201ENST00000417545 FAM25EA8MYX2 175 aa6.75□□□□□ -1.33
TRIM48-201ENST00000417545 KBTBD11O94819 623 aa6.75□□□□□ -1.33
TRIM48-201ENST00000417545 NDUFA3O95167 84 aa6.75□□□□□ -1.33
TRIM48-201ENST00000417545 DUS4LO95620 317 aaKnown RBP6.75□□□□□ -1.33
TRIM48-201ENST00000417545 HOXB5P09067 269 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms