RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 A8MZ25 164 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 PPP5D1E7EU14 171 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 H0Y980 276 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 TUSC2O75896 110 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 OR2J3O76001 311 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 IGKV1-13P0DP09 117 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 RRASP10301 218 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 RAB6AP20340 208 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 ATP5G2Q06055 141 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 TBCEQ15813 527 aaPredicted RBP8.77□□□□□ -1.01
USP4-204ENST00000416417 IZUMO2Q6UXV1 221 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 NUDCD2Q8WVJ2 157 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 USMG5Q96IX5 58 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 TMEM68Q96MH6 324 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 EPPK1P58107 5090 aaKnown RBP8.77□□□□□ -1.01
USP4-204ENST00000416417 CSMD3Q7Z407 3707 aa8.77□□□□□ -1.01
USP4-204ENST00000416417 TMEM235A6NFC5 223 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 CD7P09564 240 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 PTHLHP12272 177 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 MYOD1P15172 320 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 TATDN3Q17R31 274 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 CD300EQ496F6 205 aaPredicted RBP8.76□□□□□ -1.01
USP4-204ENST00000416417 LCN12Q6JVE5 192 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 GTSCR1Q86UQ5 136 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 DEFB125Q8N687 156 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 SNAPC3Q92966 411 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 ADTRPQ96IZ2 230 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 SPATA25Q9BR10 227 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 NDUFB11Q9NX14 153 aa8.76□□□□□ -1.01
USP4-204ENST00000416417 TRDV1A0A1B0GX56 115 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 METTL21EPA6NDL7 271 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 E7EUB6 86 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 OR2A4O95047 310 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 BRI3O95415 125 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 IGLV2-14P01704 120 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 FCER2P06734 321 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 MECP2P51608 486 aaKnown RBP8.75□□□□□ -1.01
USP4-204ENST00000416417 CD81P60033 236 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 CDK10Q15131 360 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 KCTD9Q7L273 389 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 Q8N402 240 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 ZNF645Q8N7E2 425 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 OSR1Q8TAX0 266 aaPredicted RBP8.75□□□□□ -1.01
USP4-204ENST00000416417 SPATA2Q9UM82 520 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 LYSTQ99698 3801 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 TRBV9A0A0B4J1U6 114 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 A0A1B0GW64 132 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 ZNF785A8K8V0 405 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 TEX22C9J3V5 150 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 SSX5O60225 188 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 ACTL6BO94805 426 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 OR2C1O95371 312 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 BRWD1-AS2P59051 145 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 C15orf32Q32M92 178 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 Q6ZS49 121 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 SSX9Q7RTT3 188 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 TCTEX1D2Q8WW35 142 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 CACNG8Q8WXS5 425 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 FYTTD1Q96QD9 318 aaKnown RBP8.75□□□□□ -1.01
USP4-204ENST00000416417 NEURL2Q9BR09 285 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 PEMTQ9UBM1 199 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 RBMX2Q9Y388 322 aaKnown RBP8.75□□□□□ -1.01
USP4-204ENST00000416417 OR2W1Q9Y3N9 320 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 DMRT1Q9Y5R6 373 aa8.75□□□□□ -1.01
USP4-204ENST00000416417 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 RBMY1BA6NDE4 496 aaKnown RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 RBMY1EA6NEQ0 496 aaKnown RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 FAM223BA6NKX1 122 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 TNFSF12O43508 249 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 NDUFB8O95169 186 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 DIRAS3O95661 229 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 HLA-DQB1P01920 261 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 REG1AP05451 166 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 IL6RP08887 468 aaPredicted RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 CLEC2LP0C7M8 214 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 RBMY1DP0C7P1 496 aaKnown RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 AREGP15514 252 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 DTYMKP23919 212 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 GUCA2BQ16661 112 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 HACD4Q5VWC8 232 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 FAM223AQ8IWN6 122 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 MMD2Q8IY49 270 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 TTC9CQ8N5M4 171 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 DYNLRB2Q8TF09 96 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 WDR89Q96FK6 387 aaPredicted RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 SPIN2AQ99865 258 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 SPIN2BQ9BPZ2 258 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 HIPK2Q9H2X6 1198 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 RNF167Q9H6Y7 350 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 ZC4H2Q9NQZ6 224 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 TXNL4BQ9NX01 149 aaKnown RBP8.74□□□□□ -1.01
USP4-204ENST00000416417 TAS2R8Q9NYW2 309 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 SIGLEC8Q9NYZ4 499 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 DAPK2Q9UIK4 370 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 FBXL7Q9UJT9 491 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 CEPT1Q9Y6K0 416 aa8.74□□□□□ -1.01
USP4-204ENST00000416417 C2orf70A6NJV1 201 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 FOLR2P14207 255 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 PSMB9P28065 219 aa8.73□□□□□ -1.01
USP4-204ENST00000416417 RANBP1P43487 201 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms