RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TRAPPC2BP0DI82 140 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 ERP29P30040 261 aaKnown RBP5.04□□□□□ -1.6
USP40-202ENST00000409945 INPP1P49441 399 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 CEBPDP49716 269 aaPredicted RBP5.04□□□□□ -1.6
USP40-202ENST00000409945 SLC9A3R2Q15599 337 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 AANATQ16613 207 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 UNQ9370/PRO34162Q6UXP9 181 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 BAIAP2L2Q6UXY1 529 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 JAGN1Q8N5M9 183 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 OR4D6Q8NGJ1 314 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 OR10AC1Q8NH08 325 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 ENKURQ8TC29 256 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 NEK7Q8TDX7 302 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 CREB3L1Q96BA8 519 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 SPACA5Q96QH8 159 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 C5orf66Q9H5L9 145 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 BEX1Q9HBH7 125 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 TNFRSF19Q9NS68 423 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 C19orf12Q9NSK7 152 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 TAS2R4Q9NYW5 299 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 ING4Q9UNL4 249 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 FOXJ3Q9UPW0 622 aa5.04□□□□□ -1.6
USP40-202ENST00000409945 OR2H2O95918 312 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 MELTFP08582 738 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ZNF735P0CB33 412 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 GTF2F2P13984 249 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 SPNP16150 400 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 GNB3P16520 340 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 SAA4P35542 130 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PTGFRP43088 359 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 NPBWR2P48146 333 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 GAMTQ14353 236 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 HSD17B12Q53GQ0 312 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PAN3Q58A45 887 aaKnown RBP5.03□□□□□ -1.6
USP40-202ENST00000409945 FAM27D1Q5T7N8 215 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ELP2Q6IA86 826 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PYHIN1Q6K0P9 492 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PLET1Q6UQ28 207 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 C17orf107Q6ZR85 190 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 SAMD12Q8N8I0 201 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 CAPSLQ8WWF8 208 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 MRPS24Q96EL2 167 aaKnown RBP5.03□□□□□ -1.6
USP40-202ENST00000409945 TPPP3Q9BW30 176 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 CHST6Q9GZX3 395 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PITPNC1Q9UKF7 332 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PAIP2BQ9ULR5 123 aaKnown RBP5.03□□□□□ -1.6
USP40-202ENST00000409945 CBY1Q9Y3M2 126 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 TBL2Q9Y4P3 447 aaKnown RBP5.03□□□□□ -1.6
USP40-202ENST00000409945 TRAV18A0A075B6X5 111 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 A0A1W2PRD5 423 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 A0A1W2PRF3 423 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 A0A1W2PRM7 423 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 RNASEK-C17orf49H0YIS7 233 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 TOR1AO14656 332 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 LYRM1O43325 122 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ZNF737O75373 536 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 OR7C1O76099 320 aaPredicted RBP5.03□□□□□ -1.6
USP40-202ENST00000409945 TFF1P04155 84 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ARG1P05089 322 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 CSN2P05814 226 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 UBBP0CG47 229 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ELK1P19419 428 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 SRMP19623 302 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 COX7A1P24310 79 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 CEACAM3P40198 252 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 RPS11P62280 158 aaKnown RBP eCLIP5.03□□□□□ -1.6
USP40-202ENST00000409945 PITPNAQ00169 270 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 OPCMLQ14982 345 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 P2RY14Q15391 338 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 LRRC75BQ2VPJ9 315 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 GLT8D1Q68CQ7 371 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 OSR2Q8N2R0 312 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 FGFRL1Q8N441 504 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 PNKDQ8N490 385 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 Q8N7P7 452 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 DUSP18Q8NEJ0 188 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 SGMS2Q8NHU3 365 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ZNF596Q8TC21 504 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 CST11Q9H112 138 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ESM1Q9NQ30 184 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 GHRLQ9UBU3 117 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 VPREB3Q9UKI3 123 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 SPATA2Q9UM82 520 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 GAB2Q9UQC2 676 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 ST3GAL6Q9Y274 331 aa5.03□□□□□ -1.6
USP40-202ENST00000409945 CUBNO60494 3623 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 A0A087X002 238 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 FAM240BA0A1B0GVZ2 78 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 ZNF729A6NN14 1252 aaPredicted RBP5.02□□□□□ -1.61
USP40-202ENST00000409945 C17orf98A8MV24 154 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 AIPO00170 330 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 PLA2G10O15496 165 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 CCNKO75909 580 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 CDK2AP2O75956 126 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 MAS1P04201 325 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 PRSS1P07477 247 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 IGHV1-8P0DP01 117 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 CCL3L1P16619 93 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 SERPINA2P20848 420 aa5.02□□□□□ -1.61
USP40-202ENST00000409945 IER3P46695 156 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms