RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TRMT61AQ96FX7 289 aaKnown RBP11.17□□□□□ -0.62
COL6A3-206ENST00000409809 COL18A1P39060 1754 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 NGFRP08138 427 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 TM4SF19Q96DZ7 209 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 ONECUT1Q9UBC0 465 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 A0A1W2PP11 408 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 RPL8P62917 257 aaKnown RBP11.16□□□□□ -0.62
COL6A3-206ENST00000409809 FUT5Q11128 374 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 BATF2Q8N1L9 274 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 TMEM101Q96IK0 257 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF479Q96JC4 524 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 OR2H1Q9GZK4 316 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 F8VVB4 439 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 F8VWA3 439 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 OR9G9P0C7N8 305 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 GCSAMQ8N6F7 178 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 WNT10AQ9GZT5 417 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 FGF12P61328 243 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 RPL31P62899 125 aaKnown RBP11.16□□□□□ -0.62
COL6A3-206ENST00000409809 LIPT2A6NK58 231 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 SLC25A20O43772 301 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 RUNX1Q01196 453 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF585BQ52M93 769 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 TMEM108Q6UXF1 575 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 RRHO14718 337 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 NUDT8Q8WV74 236 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 SDF2L1Q9HCN8 221 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 TRBV5-7A0A0A0MS05 114 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 PPIAL4DF5H284 164 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 IGHV4-34P06331 123 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 LAMTOR1Q6IAA8 161 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 OR52E5Q8NH55 327 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 COA4Q9NYJ1 87 aa11.16□□□□□ -0.62
COL6A3-206ENST00000409809 CACNA1GO43497 2377 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 DPM2O94777 84 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 IGHV3-9P01782 118 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 GNB2P62879 340 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 RSPO3Q9BXY4 272 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-206ENST00000409809 LINC00470Q9BZP3 86 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 PLXNB1O43157 2135 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 USF3Q68DE3 2245 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 C1QL1O75973 258 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 ATOH7Q8N100 152 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 LILRA3Q8N6C8 439 aaPredicted RBP11.15□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF441Q8N8Z8 693 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 RAB1CQ92928 201 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 CRISPLD2Q9H0B8 497 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.15□□□□□ -0.62
COL6A3-206ENST00000409809 CXCL13O43927 109 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 TRA2AQ13595 282 aaKnown RBP eCLIP11.15□□□□□ -0.62
COL6A3-206ENST00000409809 FOXL1Q12952 345 aa11.15□□□□□ -0.62
COL6A3-206ENST00000409809 TMEM238C9JI98 176 aa11.15□□□□□ -0.63
COL6A3-206ENST00000409809 UNQ9370/PRO34162Q6UXP9 181 aa11.15□□□□□ -0.63
COL6A3-206ENST00000409809 BOD1L2Q8IYS8 172 aa11.15□□□□□ -0.63
COL6A3-206ENST00000409809 AURKAIP1Q9NWT8 199 aaPredicted RBP11.15□□□□□ -0.63
COL6A3-206ENST00000409809 Q6ZNB5 142 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 SMIM14Q96QK8 99 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 TMEM160Q9NX00 188 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 K7ESM1 405 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 ORMDL2Q53FV1 153 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 BADQ92934 168 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 GPR82Q96P67 336 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 RPP21Q9H633 154 aaKnown RBP11.14□□□□□ -0.63
COL6A3-206ENST00000409809 HCFC1R1Q9NWW0 138 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 PAPPAQ13219 1627 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 MNX1P50219 401 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-206ENST00000409809 VSTM2LQ96N03 204 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 NYNRINQ9P2P1 1898 aaKnown RBP11.14□□□□□ -0.63
COL6A3-206ENST00000409809 TRAV8-6A0A0B4J262 113 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 GDF9O60383 454 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 SERF1AO75920 110 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 HBDP02042 147 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 MPZP25189 248 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 MEIG1Q5JSS6 88 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 FGF22Q9HCT0 170 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 GLI3P10071 1580 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 ZP4Q12836 540 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 RNF182Q8N6D2 247 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 ZNF793Q6ZN11 406 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 MYEOVQ96EZ4 313 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 CD160O95971 181 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 CITED2Q99967 270 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-206ENST00000409809 NPCDR1Q9BY65 106 aa11.14□□□□□ -0.63
COL6A3-206ENST00000409809 TNFAIP6P98066 277 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-206ENST00000409809 OR13H1Q8NG92 308 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 ARPC1AQ92747 370 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 ELSPBP1Q96BH3 223 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 CLEC5AQ9NY25 188 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 TRBV20-1A0A075B6N2 111 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 LMO7DNF2Z398 122 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 FGF16O43320 207 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 GZMMP51124 257 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 OCIAD2Q56VL3 154 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 LPAR2Q9HBW0 351 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 OSTCQ9NRP0 149 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 DEFB108AA8MXU0 73 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 XIRP1Q702N8 1843 aaKnown RBP11.13□□□□□ -0.63
COL6A3-206ENST00000409809 GCHFRP30047 84 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 CEACAM21Q3KPI0 293 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 C19orf48Q6RUI8 117 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms