RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 VSIG4Q9Y279 399 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 PRELID3BQ9Y3B1 194 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 HUWE1Q7Z6Z7 4374 aaKnown RBP22.08■■□□□ 1.12
HMGB1-205ENST00000399494 LY86O95711 162 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 GNB1P62873 340 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 DYRK1AQ13627 763 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 OVCH2Q7RTZ1 564 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 TMEM17Q86X19 198 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 DDB2Q92466 427 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 CLCC1Q96S66 551 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 HSD17B10Q99714 261 aaKnown RBP22.07■■□□□ 1.12
HMGB1-205ENST00000399494 OR51J1Q9H342 316 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 CCL28Q9NRJ3 127 aa22.07■■□□□ 1.12
HMGB1-205ENST00000399494 IGHV7-81A0A0B4J1V7 117 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 SLC25A17O43808 307 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 TPPPO94811 219 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 HRH1P35367 487 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 LGALS7P47929 136 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 TCTEX1D2Q8WW35 142 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 OR5B12Q96R08 314 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 ZNF2Q9BSG1 426 aaPredicted RBP22.06■■□□□ 1.12
HMGB1-205ENST00000399494 TAS2R8Q9NYW2 309 aa22.06■■□□□ 1.12
HMGB1-205ENST00000399494 RSL24D1Q9UHA3 163 aaKnown RBP22.06■■□□□ 1.12
HMGB1-205ENST00000399494 ATP6V0E1O15342 81 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 CRYZL1O95825 349 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 IGLV2-14P01704 120 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 RAB9AP51151 201 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 TMEM177Q53S58 311 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 ZNF429Q86V71 674 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 LYSMD2Q8IV50 215 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 SBSPONQ8IVN8 264 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 ABHD5Q8WTS1 349 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 DCUN1D4Q92564 292 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 DIRAS2Q96HU8 199 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 DCUN1D5Q9BTE7 237 aa22.05■■□□□ 1.12
HMGB1-205ENST00000399494 DNAH7Q8WXX0 4024 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 FCGR3BO75015 233 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 TSPAN5P62079 268 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 OR2B11Q5JQS5 317 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 CASC10Q5T4H9 136 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 ZNF66Q6ZN08 573 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 MCFD2Q8NI22 146 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 MUC7Q8TAX7 377 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 FCAMRQ8WWV6 532 aa22.04■■□□□ 1.12
HMGB1-205ENST00000399494 SLIRPQ9GZT3 109 aaKnown RBP22.04■■□□□ 1.12
HMGB1-205ENST00000399494 TRAV41A0A0B4J266 112 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 TNFSF12O43508 249 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 MSMO1Q15800 293 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 ZNF660Q6AZW8 331 aaPredicted RBP22.03■■□□□ 1.12
HMGB1-205ENST00000399494 DHRS11Q6UWP2 260 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 MINDY2Q8NBR6 621 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 ZBTB34Q8NCN2 500 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 OR6F1Q8NGZ6 308 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 OR52I2Q8NH67 350 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 BORCS5Q969J3 196 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 ABHD1Q96SE0 405 aa22.03■■□□□ 1.12
HMGB1-205ENST00000399494 FCN1O00602 326 aa22.02■■□□□ 1.12
HMGB1-205ENST00000399494 CA2P00918 260 aa22.02■■□□□ 1.12
HMGB1-205ENST00000399494 RPL30P62888 115 aaKnown RBP22.02■■□□□ 1.12
HMGB1-205ENST00000399494 IL18Q14116 193 aa22.02■■□□□ 1.12
HMGB1-205ENST00000399494 MFSD4AQ8N468 514 aa22.02■■□□□ 1.12
HMGB1-205ENST00000399494 OSR1Q8TAX0 266 aaPredicted RBP22.02■■□□□ 1.12
HMGB1-205ENST00000399494 RBM38Q9H0Z9 239 aaKnown RBP22.02■■□□□ 1.12
HMGB1-205ENST00000399494 SORL1Q92673 2214 aa22.02■■□□□ 1.11
HMGB1-205ENST00000399494 OVOL1O14753 267 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 IGLV2-23P01705 113 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 CX3CL1P78423 397 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 VMA21Q3ZAQ7 101 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 ACTBL2Q562R1 376 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 PPP1R27Q86WC6 154 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 OR4S2Q8NH73 311 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 DLX4Q92988 240 aaPredicted RBP22.01■■□□□ 1.11
HMGB1-205ENST00000399494 MOB3AQ96BX8 217 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 RCHY1Q96PM5 261 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 TPSG1Q9NRR2 321 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 KLK11Q9UBX7 282 aa22.01■■□□□ 1.11
HMGB1-205ENST00000399494 DYNC2H1Q8NCM8 4307 aaKnown RBP22■■□□□ 1.11
HMGB1-205ENST00000399494 CATR1Q13166 79 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 EIF4EBP1Q13541 118 aaPredicted RBP22■■□□□ 1.11
HMGB1-205ENST00000399494 ECSCRQ19T08 205 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 ZNF818PQ6ZRF7 136 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 GPHA2Q96T91 129 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 RABL2AQ9UBK7 228 aaPredicted RBP22■■□□□ 1.11
HMGB1-205ENST00000399494 MTFP1Q9UDX5 166 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 RABL2BQ9UNT1 228 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 A3GALT2U3KPV4 340 aa22■■□□□ 1.11
HMGB1-205ENST00000399494 GABARAPH6UMI1 98 aa21.99■■□□□ 1.11
HMGB1-205ENST00000399494 KIR2DS2P43631 304 aa21.99■■□□□ 1.11
HMGB1-205ENST00000399494 MRPS10P82664 201 aaKnown RBP21.99■■□□□ 1.11
HMGB1-205ENST00000399494 NDPQ00604 133 aa21.99■■□□□ 1.11
HMGB1-205ENST00000399494 PYHIN1Q6K0P9 492 aa21.99■■□□□ 1.11
HMGB1-205ENST00000399494 ZNF562Q6V9R5 426 aa21.99■■□□□ 1.11
HMGB1-205ENST00000399494 ALX4Q9H161 411 aaPredicted RBP21.99■■□□□ 1.11
HMGB1-205ENST00000399494 TENM2Q9NT68 2774 aa21.99■■□□□ 1.11
HMGB1-205ENST00000399494 ZNF701M0R085 212 aaPredicted RBP21.98■■□□□ 1.11
HMGB1-205ENST00000399494 SAP30O75446 220 aa21.98■■□□□ 1.11
HMGB1-205ENST00000399494 CNIH1O95406 144 aa21.98■■□□□ 1.11
HMGB1-205ENST00000399494 SPNP16150 400 aa21.98■■□□□ 1.11
HMGB1-205ENST00000399494 C19orf54Q5BKX5 351 aa21.98■■□□□ 1.11
HMGB1-205ENST00000399494 RNASE10Q5GAN6 216 aaKnown RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 253.4 ms