RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 H3BRM9 83 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 PSCAO43653 123 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 MOSPD3O75425 235 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 AMY1AP04745 511 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 TMEM252Q8N6L7 170 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 FAM181AQ8N9Y4 354 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 ZNRF1Q8ND25 227 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 OR11H1Q8NG94 326 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 OR11H2Q8NH07 326 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 C21orf62Q9NYP8 219 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 ASPDHA6ND91 283 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 IGKV1D-33P01593 117 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 IGKV1-33P01594 117 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 RCC1P18754 421 aaPredicted RBP6.16□□□□□ -1.42
UPF2-203ENST00000397053 ZP3P21754 424 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 SLC22A18ASQ8N1D0 253 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 SLIRPQ9GZT3 109 aaKnown RBP6.16□□□□□ -1.42
UPF2-203ENST00000397053 GP6Q9HCN6 339 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 TUBD1Q9UJT1 453 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 HSF4Q9ULV5 492 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 NEU3Q9UQ49 428 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 S4R3C0 116 aa6.16□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A10PA6NDY2 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A18PA6NE21 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A16PA6NEW6 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A20PA6NIJ5 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A8PA6NJQ4 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A7PA6NKC0 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A22PA8MWA6 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A12PA8MX19 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A5PA8MXJ8 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A23PA8MXZ1 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 HOXA3O43365 443 aaPredicted RBP6.15□□□□□ -1.42
UPF2-203ENST00000397053 IGHV3-23P01764 117 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 HLA-DQA1P01909 254 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A15PP0C7V4 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A13PP0C7W8 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A14PP0C7W9 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FAM90A24PP0C7X0 464 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 BCL2P10415 239 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 COX5BP10606 129 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 FABP2P12104 132 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 COL5A1-AS1Q5SY13 56 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 BHLHA9Q7RTU4 235 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 OR4D5Q8NGN0 318 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 RNASE6Q93091 150 aaKnown RBP6.15□□□□□ -1.42
UPF2-203ENST00000397053 KCNK7Q9Y2U2 307 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 ARFGEF2Q9Y6D5 1785 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 A0A087WX48 190 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 C7orf71A4D174 169 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 M0QZK8 103 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 TSPAN2O60636 221 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 COX6A1P12074 109 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 CSRP1P21291 193 aaKnown RBP6.15□□□□□ -1.42
UPF2-203ENST00000397053 CA7P43166 264 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 ZNF415Q09FC8 603 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 LDLRAD2Q5SZI1 272 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 NCMAPQ5T1S8 102 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 ZNF385CQ66K41 422 aaPredicted RBP6.15□□□□□ -1.42
UPF2-203ENST00000397053 XAF1Q6GPH4 301 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 TMEM54Q969K7 222 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 DOT1LQ8TEK3 1739 aa6.15□□□□□ -1.42
UPF2-203ENST00000397053 MED13LQ71F56 2210 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 RICTORQ6R327 1708 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 IFT172Q9UG01 1749 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 IGHV3OR16-8A0A075B7F1 116 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 K7ERU9 68 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 ZNF883P0CG24 379 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 BSPH1Q075Z2 132 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 FAM57AQ8TBR7 257 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 G6PC2Q9NQR9 355 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 DSPPQ9NZW4 1301 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 ATP5LO75964 103 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 MOSP00540 346 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 ICAM4Q14773 271 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 ZIC4Q8N9L1 334 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 GATAD1Q8WUU5 269 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 MARVELD1Q9BSK0 173 aa6.15□□□□□ -1.43
UPF2-203ENST00000397053 A0A1W2PP11 408 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 IL11P20809 199 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 DNLZQ5SXM8 178 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 CLEC19AQ6UXS0 136 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 RBKSQ9H477 322 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 RPRMQ9NS64 109 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 JKAMPQ9P055 326 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 TRAV20A0A0B4J274 112 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 PEBP1P30086 187 aaKnown RBP6.14□□□□□ -1.43
UPF2-203ENST00000397053 OR10AG1Q8NH19 301 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 PAPPA2Q9BXP8 1791 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 RBMY1BA6NDE4 496 aaKnown RBP6.14□□□□□ -1.43
UPF2-203ENST00000397053 RBMY1EA6NEQ0 496 aaKnown RBP6.14□□□□□ -1.43
UPF2-203ENST00000397053 CTDSPLO15194 276 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 PITX3O75364 302 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 RBMY1DP0C7P1 496 aaKnown RBP6.14□□□□□ -1.43
UPF2-203ENST00000397053 RBMY1A1P0DJD3 496 aaKnown RBP6.14□□□□□ -1.43
UPF2-203ENST00000397053 RBMY1CP0DJD4 496 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 MEF2BQ02080 365 aaPredicted RBP6.14□□□□□ -1.43
UPF2-203ENST00000397053 C1QTNF12Q5T7M4 302 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 COLCA1Q6ZS62 124 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 SLC25A28Q96A46 364 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms