RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ARPC1AQ92747 370 aa17.02■□□□□ 0.31
CLN3-207ENST00000395653 TINAGL1Q9GZM7 467 aaPredicted RBP17.02■□□□□ 0.31
CLN3-207ENST00000395653 FABP12A6NFH5 140 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 GPR31O00270 319 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 IFNA6P05013 189 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 SAA1P0DJI8 122 aaPredicted RBP17.01■□□□□ 0.31
CLN3-207ENST00000395653 EGR2P11161 476 aaPredicted RBP17.01■□□□□ 0.31
CLN3-207ENST00000395653 PSMB8P28062 276 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 S100A5P33763 92 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 UCP3P55916 312 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 SSBP2P81877 361 aaPredicted RBP17.01■□□□□ 0.31
CLN3-207ENST00000395653 TMEM267Q0VDI3 215 aaPredicted RBP17.01■□□□□ 0.31
CLN3-207ENST00000395653 ECSCRQ19T08 205 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 C19orf54Q5BKX5 351 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 SPAG16Q8N0X2 631 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 MINDY2Q8NBR6 621 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 DGCR14Q96DF8 476 aaKnown RBP17.01■□□□□ 0.31
CLN3-207ENST00000395653 NUBP2Q9Y5Y2 271 aa17.01■□□□□ 0.31
CLN3-207ENST00000395653 ARPC1BO15143 372 aaKnown RBP17■□□□□ 0.31
CLN3-207ENST00000395653 GSTZ1O43708 216 aaPredicted RBP17■□□□□ 0.31
CLN3-207ENST00000395653 IGLV1-40P01703 118 aa17■□□□□ 0.31
CLN3-207ENST00000395653 PJVKQ0ZLH3 352 aa17■□□□□ 0.31
CLN3-207ENST00000395653 FXYD3Q14802 87 aa17■□□□□ 0.31
CLN3-207ENST00000395653 AKIRIN2Q53H80 203 aa17■□□□□ 0.31
CLN3-207ENST00000395653 AADACL3Q5VUY0 350 aa17■□□□□ 0.31
CLN3-207ENST00000395653 FAM103A1Q9BTL3 118 aaKnown RBP17■□□□□ 0.31
CLN3-207ENST00000395653 CREBL2O60519 120 aaPredicted RBP16.99■□□□□ 0.31
CLN3-207ENST00000395653 RAMP3O60896 148 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 PGLYRP1O75594 196 aaPredicted RBP16.99■□□□□ 0.31
CLN3-207ENST00000395653 RAB3DO95716 219 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 HRASP01112 189 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 RPLP1P05386 114 aaKnown RBP16.99■□□□□ 0.31
CLN3-207ENST00000395653 SLC6A1P30531 599 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 PRSS8Q16651 343 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 MRGPRG-AS1Q2M3A8 158 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 STEAP1BQ6NZ63 245 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 LHFPL1Q86WI0 220 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 POC5Q8NA72 575 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 OR51H1Q8NH63 302 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 VSTM2AQ8TAG5 236 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 CD300LFQ8TDQ1 290 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 RSRP1Q9BUV0 290 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 PLXNB1O43157 2135 aa16.99■□□□□ 0.31
CLN3-207ENST00000395653 CNIH1O95406 144 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 RLN1P04808 185 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 PF4V1P10720 104 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 GNB1P62873 340 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 IDO2Q6ZQW0 420 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 SLC38A6Q8IZM9 456 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 OR4D10Q8NGI6 311 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 AIFM2Q9BRQ8 373 aa16.98■□□□□ 0.31
CLN3-207ENST00000395653 FOXA2Q9Y261 457 aaPredicted RBP16.98■□□□□ 0.31
CLN3-207ENST00000395653 A0A1W2PN81 502 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 DPPA5A6NC42 116 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 HPRT1P00492 218 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 S100GP29377 79 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 CHRNA7P36544 502 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 MEF2DQ14814 521 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 UNQ5815/PRO19632Q6UWF5 114 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 LCNL1Q6ZST4 164 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 VKORC1L1Q8N0U8 176 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 PUSL1Q8N0Z8 303 aaKnown RBP16.97■□□□□ 0.31
CLN3-207ENST00000395653 LFNGQ8NES3 379 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 GRPEL2Q8TAA5 225 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 MYOZ3Q8TDC0 251 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 RHOVQ96L33 236 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 V9GYH0 126 aa16.97■□□□□ 0.31
CLN3-207ENST00000395653 OR2A4O95047 310 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 F2RP25116 425 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 TAS2R31P59538 309 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 MMD2Q8IY49 270 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 OR5M8Q8NGP6 311 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 OR2A7Q96R45 310 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 ZNF430Q9H8G1 570 aaPredicted RBP16.96■□□□□ 0.31
CLN3-207ENST00000395653 PLEKHA2Q9HB19 425 aa16.96■□□□□ 0.31
CLN3-207ENST00000395653 SOX15O60248 233 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 KBTBD11O94819 623 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 CDX1P47902 265 aaPredicted RBP16.96■□□□□ 0.3
CLN3-207ENST00000395653 TNXAQ16473 311 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 POU2AF1Q16633 256 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 PHLDA2Q53GA4 152 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 FOXB2Q5VYV0 432 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 TMEM65Q6PI78 240 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 CCDC190Q86UF4 302 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 ZNF695Q8IW36 515 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 KLHL30-AS1Q8NEE0 82 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 TMEM167AQ8TBQ9 72 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 ZNF486Q96H40 463 aaPredicted RBP16.96■□□□□ 0.3
CLN3-207ENST00000395653 TMEM68Q96MH6 324 aa16.96■□□□□ 0.3
CLN3-207ENST00000395653 ANKRD20A5PA0PJZ0 165 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 NUDT19A8MXV4 375 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 ACTL6BO94805 426 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 ZNF735P0CB33 412 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 AKAIN1P0CW23 69 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 NQO2P16083 231 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 PTBP1P26599 531 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLN3-207ENST00000395653 C18orf65Q6ZTR6 163 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 TERB2Q8NHR7 220 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 KLK15Q9H2R5 256 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 COMMD9Q9P000 198 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms