RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 OR10D4PQ8NGN7 298 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 SPIN2AQ99865 258 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 SPIN2BQ9BPZ2 258 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 PKIBQ9C010 78 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 MMP24Q9Y5R2 645 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 PPP1R2P9O14990 202 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 IGHV3-48P01763 117 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 UBE2KP61086 200 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 RPL39P5Q59GN2 51 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 PLAC9Q5JTB6 97 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 LGI3Q8N145 548 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 HSD17B11Q8NBQ5 300 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 PLPPR1Q8TBJ4 325 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 HARBI1Q96MB7 349 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 ZNRD1Q9P1U0 126 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 LAMA5O15230 3695 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 OR5AC1P0C628 307 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 USF1P22415 310 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-205ENST00000392004 BRS3P32247 399 aa8.6□□□□□ -1.03
COL6A3-205ENST00000392004 TAGLN2P37802 199 aaKnown RBP8.6□□□□□ -1.03
COL6A3-205ENST00000392004 CDX1P47902 265 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-205ENST00000392004 E5RGE8 158 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 HOXA5P20719 270 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 HLA-DRB3P79483 266 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 MALSU1Q96EH3 234 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 Q96M66 194 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 BAHCC1Q9P281 2608 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 C12orf77C9JDV5 145 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 K7N7A8 449 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 SEC11BP0C7V7 166 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 HTR1DP28221 377 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 WIPF3A6NGB9 483 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 SHISA9B4DS77 424 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 SSSCA1O60232 199 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 SNRPCP09234 159 aaKnown RBP8.59□□□□□ -1.03
COL6A3-205ENST00000392004 TUBG1P23258 451 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 TMEM50BP56557 158 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 FAM53AQ6NSI3 398 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-205ENST00000392004 C20orf204Q6ZNR8 217 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 ACY3Q96HD9 319 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 ABHD14AQ9BUJ0 271 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 TUBG2Q9NRH3 451 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 ADGRG4Q8IZF6 3080 aa8.59□□□□□ -1.03
COL6A3-205ENST00000392004 TMEM14DPA8MWL7 114 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 SEC14L6B5MCN3 397 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 TMEM178BH3BS89 294 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 PGA5P0DJD9 388 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 GPX4P36969 197 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-205ENST00000392004 ECI1P42126 302 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 RTBDNQ9BSG5 229 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-205ENST00000392004 SH2D7A6NKC9 451 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-205ENST00000392004 CST7O76096 145 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 G6PCP35575 357 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 MSMPQ1L6U9 139 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 PDZD11Q5EBL8 140 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 GGNBP1Q5YKI7 109 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 CFAP161Q6P656 301 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 CLEC9AQ6UXN8 241 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 MS4A10Q96PG2 267 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 URGCP-MRPS24S4R325 110 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 SORL1Q92673 2214 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 SLC25A17O43808 307 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 DEDDO75618 318 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 IFNA5P01569 189 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 DANCRP0C864 163 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 SUPT4H1P63272 117 aaKnown RBP8.58□□□□□ -1.04
COL6A3-205ENST00000392004 AKR1C8PQ5T2L2 129 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 TMEM182Q6ZP80 229 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-205ENST00000392004 TMEM219Q86XT9 240 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 ITPR3Q14573 2671 aa8.58□□□□□ -1.04
COL6A3-205ENST00000392004 J3QW42 95 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 GPR137BO60478 399 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 SURF2Q15527 256 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 TBC1D26Q86UD7 250 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 MISP3Q96FF7 219 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 RHOVQ96L33 236 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 DOK5Q9P104 306 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 S4R3C0 116 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 A0A0U1RQK1 487 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 ZNF320A2RRD8 509 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 KITLGP21583 273 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 LINC00205P59089 165 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 HIST2H3PS2Q5TEC6 136 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 MOB1BQ7L9L4 216 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 C1QL4Q86Z23 238 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 A0A1B0GV90 55 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 RNF224P0DH78 156 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 PLA2G2AP14555 144 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 OTX1P32242 354 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 NKX2-1P43699 371 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 IL13RA2Q14627 380 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 CD177Q8N6Q3 437 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 CYYR1Q96J86 154 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 RASL11BQ9BPW5 248 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 HIPK2Q9H2X6 1198 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 LIN7CQ9NUP9 197 aaKnown RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 CACNG5Q9UF02 275 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 RPH3ALQ9UNE2 315 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 CBY1Q9Y3M2 126 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 TRAV24A0A0B4J272 114 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms