RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LPAR3Q9UBY5 353 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 CDC42EP3Q9UKI2 254 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 LMO7Q8WWI1 1683 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 IGHV1-69-2A0A0G2JMI3 117 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 CXorf1O96002 111 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 HPRT1P00492 218 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 INAFM2P0DMQ5 153 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 RPS11P62280 158 aaKnown RBP eCLIP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ORMDL2Q53FV1 153 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MRPL14Q6P1L8 145 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SLC25A38Q96DW6 304 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 INSM2Q96T92 566 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 NRIP2Q9BQI9 281 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 H0Y8X5 98 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 DGCR2P98153 550 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 RPL18AQ02543 176 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 CFHR3Q02985 330 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SS18Q15532 418 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ZIC1Q15915 447 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 DYNAPQ8N1N2 210 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 C2orf50Q96LR7 162 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 TARBP1Q13395 1621 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 IGHV4OR15-8A0A075B7B6 117 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 A0A087WW49 117 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 C3orf85A0A1B0GTC6 90 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 HMGA2P52926 109 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 RAE1P78406 368 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 RBM3P98179 157 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 FKBP1CQ5VVH2 108 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 WDR82Q6UXN9 313 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 DTX1Q86Y01 620 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 C10orf111Q8N326 155 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 PP6455Q8WZ26 134 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 FGF11Q92914 225 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SSBP4Q9BWG4 385 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 SIGLEC8Q9NYZ4 499 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 PRNDQ9UKY0 176 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MROH1Q8NDA8 1641 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ADGRB2O60241 1585 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 NCKAP5O14513 1909 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 A0A0G2JLM5 398 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 HOXB4P17483 251 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 C1QL3Q5VWW1 255 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 PATE1Q8WXA2 126 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 CCL13Q99616 98 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 TLNRD1Q9H1K6 362 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 EVA1AQ9H8M9 152 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 LMTK2Q8IWU2 1503 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MRPS14O60783 128 aaKnown RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 PEX11BO96011 259 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 CD68P34810 354 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM50BP56557 158 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ISL1P61371 349 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 MRGPRX3Q96LB0 322 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 TXNDC17Q9BRA2 123 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 C21orf62Q9NYP8 219 aa4.02□□□□□ -1.77
SCN1A-202ENST00000375405 ABCC6O95255 1503 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 IGHV4-4A0A075B6R2 117 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TRAV24A0A0B4J272 114 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PRR19A6NJB7 356 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 CDIPTO14735 213 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 CRLF1O75462 422 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 HBZP02008 142 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 C1QTNF9P0C862 333 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 POLR2IP36954 125 aaKnown RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RPS27P42677 84 aaKnown RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TNFRSF9Q07011 255 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 NKG7Q16617 165 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TSPO2Q5TGU0 170 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PEAR1Q5VY43 1037 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-202ENST00000375405 METRNLQ641Q3 311 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 SLC48A1Q6P1K1 146 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 CLEC19AQ6UXS0 136 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 LIMS2Q7Z4I7 341 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ISCA2Q86U28 154 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 NAV1Q8NEY1 1877 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PPIAL4CA0A0B4J2A2 164 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RS1O15537 224 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 SYNGR1O43759 233 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 CLDN14O95500 239 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TCRBP04435 133 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 PPIAL4GP0DN37 164 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ATF1P18846 271 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 COX20Q5RI15 118 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 C9orf50Q5SZB4 431 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM19A2Q8N3H0 131 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 OR11H4Q8NGC9 324 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RAB40CQ96S21 281 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 UBE2D4Q9Y2X8 147 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ANKRD31Q8N7Z5 1873 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FMN2Q9NZ56 1722 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 A0A1B0GTH9 108 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 TMEM202A6NGA9 273 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ACTL10Q5JWF8 245 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 FAM219BQ5XKK7 198 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 LINC00305Q7Z4B0 112 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 C1QL2Q7Z5L3 287 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 RMI2Q96E14 147 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 NABP2Q9BQ15 211 aa4.01□□□□□ -1.77
SCN1A-202ENST00000375405 ANGPTL4Q9BY76 406 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms