RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PRH1P02810 166 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 KITLGP21583 273 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 VDAC1P21796 283 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 CD200P41217 278 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 KLF3P57682 345 aaPredicted RBP11.88□□□□□ -0.51
HMGA1-203ENST00000374116 PNRC1Q12796 327 aaPredicted RBP11.88□□□□□ -0.51
HMGA1-203ENST00000374116 ZNF154Q13106 437 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 ZNF146Q15072 292 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 ZNF497Q6ZNH5 498 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 PARP12Q9H0J9 701 aaKnown RBP11.88□□□□□ -0.51
HMGA1-203ENST00000374116 CBLN4Q9NTU7 201 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.88□□□□□ -0.51
HMGA1-203ENST00000374116 IGHV3-64DA0A0J9YX35 117 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 NXPH2O95156 264 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 WNT2P09544 360 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 NKX2-1P43699 371 aaPredicted RBP11.88□□□□□ -0.51
HMGA1-203ENST00000374116 FHITP49789 147 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 C11orf71Q6IPW1 123 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 ZNF429Q86V71 674 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 C1orf174Q8IYL3 243 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 NIPSNAP3BQ9BS92 247 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 SNHG12Q9BXW3 62 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 C11orf1Q9H5F2 150 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 OR14J1Q9UGF5 321 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 ARID1AO14497 2285 aa11.88□□□□□ -0.51
HMGA1-203ENST00000374116 IGLV3-9A0A075B6K5 115 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 C3orf80F5H4A9 247 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 M0QZK8 103 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 M0R143 59 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 SIRPB1O00241 398 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 CDIPTO14735 213 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 MLNRO43193 412 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 DLEU1O43261 78 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 TIMM8AO60220 97 aaPredicted RBP11.87□□□□□ -0.51
HMGA1-203ENST00000374116 GGCTO75223 188 aaKnown RBP11.87□□□□□ -0.51
HMGA1-203ENST00000374116 AMBPP02760 352 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 F2RP25116 425 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 PDZD11Q5EBL8 140 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 NMSQ5H8A3 153 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 MBNL2Q5VZF2 373 aaKnown RBP11.87□□□□□ -0.51
HMGA1-203ENST00000374116 DTX2Q86UW9 622 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 C11orf53Q8IXP5 236 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 HES4Q9HCC6 221 aa11.87□□□□□ -0.51
HMGA1-203ENST00000374116 B9A039 149 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 H0YL77 283 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 SCAF4O95104 1147 aaKnown RBP11.86□□□□□ -0.51
HMGA1-203ENST00000374116 IGHV3-13P01766 116 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 GRPP07492 148 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 MMP9P14780 707 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 PDLIM4P50479 330 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 Q6ZR03 302 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 PRR18Q8N4B5 295 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 OR2C3Q8N628 320 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 OR10V1Q8NGI7 309 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 PLPPR1Q8TBJ4 325 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 PERPQ96FX8 193 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 BSCL2Q96G97 398 aaPredicted RBP11.86□□□□□ -0.51
HMGA1-203ENST00000374116 RARRES2Q99969 163 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 DYNLRB1Q9NP97 96 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 VAX2Q9UIW0 290 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 TRAPPC2LQ9UL33 140 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 WIPI2Q9Y4P8 454 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 VSTM5A8MXK1 200 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.86□□□□□ -0.51
HMGA1-203ENST00000374116 ADAM20O43506 726 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 SPRY3O43610 288 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 SELENOVP59797 346 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 ICAM4Q14773 271 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 EFNB3Q15768 340 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 SPRNQ5BIV9 151 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 FAM213BQ8TBF2 198 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 IGFBPL1Q8WX77 278 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 RBMXL1Q96E39 390 aaKnown RBP11.86□□□□□ -0.51
HMGA1-203ENST00000374116 CXXC4Q9H2H0 198 aa11.86□□□□□ -0.51
HMGA1-203ENST00000374116 MBNL3Q9NUK0 354 aaKnown RBP11.86□□□□□ -0.51
HMGA1-203ENST00000374116 CLDN34H7C241 214 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 CYB5R3P00387 301 aaPredicted RBP11.85□□□□□ -0.51
HMGA1-203ENST00000374116 OPN1MWP04001 364 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 OPN1MW2P0DN77 364 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 OPN1MW3P0DN78 364 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 SLC25A6P12236 298 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 EPHA1P21709 976 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 PCP4P48539 62 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 EWSR1Q01844 656 aaKnown RBP eCLIP11.85□□□□□ -0.51
HMGA1-203ENST00000374116 ID3Q02535 119 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 HAGHQ16775 308 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 DPPA3Q6W0C5 159 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 OR1P1Q8NH06 330 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 IL1F10Q8WWZ1 152 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 CTDSP1Q9GZU7 261 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 SH3BGRL3Q9H299 93 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 GOLT1BQ9Y3E0 138 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 CCDC168Q8NDH2 2452 aa11.85□□□□□ -0.51
HMGA1-203ENST00000374116 KIR2DL5BA0A0G2JN68 375 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 KIR2DL5BA0A0G2JPC4 375 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 OVOL3O00110 214 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 TNFSF12O43508 249 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 HAND1O96004 215 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 VAMP2P63027 116 aa11.84□□□□□ -0.51
HMGA1-203ENST00000374116 CCL8P80075 99 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms