RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SPG11Q96JI7 2443 aa11.2□□□□□ -0.62
PTPRF-202ENST00000372405 TEX46H3BTG2 121 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 FGF16O43320 207 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 LIPFP07098 398 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 ZFP36P26651 326 aaKnown RBP11.19□□□□□ -0.62
PTPRF-202ENST00000372405 SULT1A1P50225 295 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 TAS2R30P59541 319 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 ERVK-16P61578 105 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 BAXQ07812 192 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 POU2AF1Q16633 256 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 OR4A47Q6IF82 309 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 FAM71F2Q6NXP2 309 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 COMMD7Q86VX2 200 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 PDZD9Q8IXQ8 264 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 NABP2Q9BQ15 211 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 ONECUT1Q9UBC0 465 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 LOC105371242A0A075B767 164 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 A0A1W2PPH5 198 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 FBXO24O75426 580 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 RBMXL2O75526 392 aaKnown RBP11.19□□□□□ -0.62
PTPRF-202ENST00000372405 IGHV2-5P01817 119 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 IL6RP08887 468 aaPredicted RBP11.19□□□□□ -0.62
PTPRF-202ENST00000372405 METTL15P1P0C7V9 234 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 OR13D1Q8NGV5 346 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 GINS3Q9BRX5 216 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 REG4Q9BYZ8 158 aa11.19□□□□□ -0.62
PTPRF-202ENST00000372405 MED6O75586 246 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 ARHGDIBP52566 201 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 ARF6P62330 175 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 EIF5AP63241 154 aaKnown RBP11.18□□□□□ -0.62
PTPRF-202ENST00000372405 RTL8BQ17RB0 113 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 HLA-DRB5Q30154 266 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 SPANXN5Q5MJ07 72 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 DHRS7BQ6IAN0 325 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-202ENST00000372405 DTD1Q8TEA8 209 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 OR4C12Q96R67 309 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 CLEC7AQ9BXN2 247 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 BPESC1Q9GZL8 116 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 SH3BGRL3Q9H299 93 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 RFNGQ9Y644 331 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 FBN2P35556 2912 aa11.18□□□□□ -0.62
PTPRF-202ENST00000372405 BORCS7-ASMTA0A0B4J1R7 106 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 COX7A1P24310 79 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 TAGLNQ01995 201 aaKnown RBP11.17□□□□□ -0.62
PTPRF-202ENST00000372405 PDLIM3Q53GG5 364 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-202ENST00000372405 TMEM14EPQ6UXP3 125 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 STX12Q86Y82 276 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 OR4P4Q8NGL7 312 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 OR4A16Q8NH70 328 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 TNFRSF14Q92956 283 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 CCL19Q99731 98 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 MED9Q9NWA0 146 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 WNK2Q9Y3S1 2297 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 SVEP1Q4LDE5 3571 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 C15orf61A6NNL5 157 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 HRASP01112 189 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 SPP1P10451 314 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 LDLRAD2Q5SZI1 272 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 ZNF429Q86V71 674 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 TGIF2LXQ8IUE1 241 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 STPG2Q8N412 459 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 HSD17B11Q8NBQ5 300 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 BEND2Q8NDZ0 799 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 TMEM14BQ9NUH8 114 aa11.17□□□□□ -0.62
PTPRF-202ENST00000372405 ABCA2Q9BZC7 2435 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 PMS2P5A8MQ11 134 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 BUB1B-PAK6H3BSN5 160 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 APOA2P02652 100 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 MYOD1P15172 320 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 LMO4P61968 165 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 PAX2Q02962 417 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 TMEM177Q53S58 311 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 HCP5Q6MZN7 132 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 PNKDQ8N490 385 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 OR1S2Q8NGQ3 325 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 OR52E5Q8NH55 327 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 RNF141Q8WVD5 230 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 ATP5SQ99766 215 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 SIRT7Q9NRC8 400 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 CSMD2Q7Z408 3487 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 A1L4Q6 167 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 MFSD2BA6NFX1 497 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 CEBPZOSA8MTT3 80 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 H7C2Y5 167 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 M0R1W7 72 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 IFNA17P01571 189 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 SAA1P0DJI8 122 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-202ENST00000372405 SULT1A2P50226 295 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 PRRX1P54821 245 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 SPCS3P61009 180 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 ZNF266Q14584 549 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 CLDND2Q8NHS1 167 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 OSR1Q8TAX0 266 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-202ENST00000372405 PCGF1Q9BSM1 259 aa11.16□□□□□ -0.62
PTPRF-202ENST00000372405 FOXA2Q9Y261 457 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-202ENST00000372405 CELSR2Q9HCU4 2923 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 hCG_1809904A0A1W2PP81 198 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 A0A1W2PPE2 198 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 A0A1W2PR64 198 aa11.15□□□□□ -0.62
PTPRF-202ENST00000372405 A0A1W2PRV1 198 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms