RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HSD17B10Q99714 261 aaKnown RBP10.06□□□□□ -0.8
USP1-201ENST00000339950 DERL1Q9BUN8 251 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 TPPP3Q9BW30 176 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 QTRT1Q9BXR0 403 aaKnown RBP10.06□□□□□ -0.8
USP1-201ENST00000339950 ARL2-SNX15V9GYD0 113 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 FCN1O00602 326 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 NTN3O00634 580 aaPredicted RBP10.06□□□□□ -0.8
USP1-201ENST00000339950 OR5G3P0C626 314 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 AGAP20933 346 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 TAS2R60P59551 318 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 ABLIM2Q6H8Q1 611 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 TCF23Q7RTU1 214 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 KDF1Q8NAX2 398 aaPredicted RBP10.06□□□□□ -0.8
USP1-201ENST00000339950 C14orf144Q96I85 54 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 UHRF2Q96PU4 802 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 ZNF586Q9NXT0 402 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 NAT8BQ9UHF3 227 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 PROCRQ9UNN8 238 aa10.06□□□□□ -0.8
USP1-201ENST00000339950 A0A1B0GU03 582 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 IGHV1-2P23083 117 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 COTL1Q14019 142 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 SMIM21Q3B7S5 101 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 SPSB3Q6PJ21 355 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 C11orf42Q8N5U0 333 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 OR4P4Q8NGL7 312 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 CLDND2Q8NHS1 167 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 ZNF596Q8TC21 504 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 CTDSP1Q9GZU7 261 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 ERVFC1-1P60608 527 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 CTAG1AP78358 180 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 ID3Q02535 119 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 TNFRSF9Q07011 255 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 CMTM2Q8TAZ6 248 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 PARLQ9H300 379 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 VAX2Q9UIW0 290 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 TMEM131Q92545 1883 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 F6UZH7 168 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 KLK10O43240 276 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 MEF2BQ02080 365 aaPredicted RBP10.05□□□□□ -0.8
USP1-201ENST00000339950 ANAPC10Q9UM13 185 aa10.05□□□□□ -0.8
USP1-201ENST00000339950 SLC17A3O00476 420 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 NAPSAO96009 420 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 CYB5R3P00387 301 aaPredicted RBP10.04□□□□□ -0.8
USP1-201ENST00000339950 FXYD3Q14802 87 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 PPP1R35Q8TAP8 253 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 OR2V2Q96R30 315 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 TUBA4BQ9H853 241 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 NOTCH2Q04721 2471 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 HSBP1L1C9JCN9 74 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 GYPAP02724 150 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 RPLP1P05386 114 aaKnown RBP10.04□□□□□ -0.8
USP1-201ENST00000339950 HOXB1P14653 301 aaPredicted RBP10.04□□□□□ -0.8
USP1-201ENST00000339950 PRDX2P32119 198 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 ELOBQ15370 118 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 RPP25LQ8N5L8 163 aaKnown RBP10.04□□□□□ -0.8
USP1-201ENST00000339950 ZNF525Q8N782 197 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 MARCH11A6NNE9 402 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 CA11O75493 328 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 DLX1P56177 255 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 MRPL54Q6P161 138 aaKnown RBP10.04□□□□□ -0.8
USP1-201ENST00000339950 HEPN1Q6WQI6 88 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 OR1P1Q8NH06 330 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 ITLN1Q8WWA0 313 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 TECTBQ96PL2 329 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 TLN2Q9Y4G6 2542 aa10.04□□□□□ -0.8
USP1-201ENST00000339950 TRAV3A0A0B4J244 114 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 FOXI3A8MTJ6 420 aaPredicted RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 B4E171 279 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 C17orf112F2Z3M2 114 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 DNPH1O43598 174 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 TMEM11P17152 192 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 TSPAN7P41732 249 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 P2RY6Q15077 328 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 NMSQ5H8A3 153 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 ZNF324BQ6AW86 544 aaPredicted RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 PCSK4Q6UW60 755 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 LURAP1LQ8IV03 231 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 SGMS2Q8NHU3 365 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 SNRNP40Q96DI7 357 aaKnown RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 CIB3Q96Q77 187 aaPredicted RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 HSPB9Q9BQS6 159 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 SMPD2O60906 423 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 IGKV1-39P01597 117 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 IGKV1D-39P04432 117 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 CECR9P0C854 216 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 CRISP2P16562 243 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 UCP3P55916 312 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 PLGLAQ15195 96 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 BLNKQ8WV28 456 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 REG1AP05451 166 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 HINT1P49773 126 aaPredicted RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 PAX9P55771 341 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 ACOT6Q3I5F7 207 aaPredicted RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 FAM214BQ7L5A3 538 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 WDR86Q86TI4 376 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 H1FOOQ8IZA3 346 aaPredicted RBP10.03□□□□□ -0.8
USP1-201ENST00000339950 RPRMLQ8N4K4 120 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 TMEM56Q96MV1 263 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 TMEM56-RWDD3S4R434 201 aa10.03□□□□□ -0.8
USP1-201ENST00000339950 NUP210LQ5VU65 1888 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms