RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 FGL1Q08830 312 aa14.58□□□□□ -0.08
HMGA1-201ENST00000311487 ANKRD55Q3KP44 614 aa14.58□□□□□ -0.08
HMGA1-201ENST00000311487 RBMS3Q6XE24 437 aaKnown RBP14.58□□□□□ -0.08
HMGA1-201ENST00000311487 SLC38A6Q8IZM9 456 aa14.58□□□□□ -0.08
HMGA1-201ENST00000311487 SLC2A9Q9NRM0 540 aa14.58□□□□□ -0.08
HMGA1-201ENST00000311487 GPR31O00270 319 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 RAMP3O60896 148 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 CFDP00746 253 aaPredicted RBP14.57□□□□□ -0.08
HMGA1-201ENST00000311487 CNTFRP26992 372 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 LRRC75BQ2VPJ9 315 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 SP6Q3SY56 376 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 TMUB2Q71RG4 321 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 TBC1D26Q86UD7 250 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 BVESQ8NE79 360 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 COQ8AQ8NI60 647 aa14.57□□□□□ -0.08
HMGA1-201ENST00000311487 H0YJW9 148 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 FCGR3BO75015 233 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 RPA2P15927 270 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 S100A11P31949 105 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 BRWD1-AS2P59051 145 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 EIF4EBP1Q13541 118 aaPredicted RBP14.56□□□□□ -0.08
HMGA1-201ENST00000311487 EXOSC2Q13868 293 aaKnown RBP14.56□□□□□ -0.08
HMGA1-201ENST00000311487 CCDC144NLQ6NUI1 221 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 CMTM1Q8IZ96 169 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 PPP1R1CQ8WVI7 109 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 VENTXO95231 258 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 SLC25A4P12235 298 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 C11orf87Q6NUJ2 197 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.56□□□□□ -0.08
HMGA1-201ENST00000311487 SUN5Q8TC36 379 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 RAB18Q9NP72 206 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 COMMD9Q9P000 198 aa14.56□□□□□ -0.08
HMGA1-201ENST00000311487 LOC105371267A0A1B0GV96 52 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 C5orf51A6NDU8 294 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 DNAJC9-AS1A6NH13 148 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 SH2D7A6NKC9 451 aaPredicted RBP14.55□□□□□ -0.08
HMGA1-201ENST00000311487 ADAP1O75689 374 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 UCP3P55916 312 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 LRRC37A5PQ49AS3 106 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 TMEM65Q6PI78 240 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 GSG1LQ6UXU4 331 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 OR8H3Q8N146 312 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 MFFQ9GZY8 342 aa14.55□□□□□ -0.08
HMGA1-201ENST00000311487 C13orf42A0A1B0GVH6 325 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 CRYM-AS1A6NIL9 109 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 IFNA7P01567 189 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 BRS3P32247 399 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 F2RL1P55085 397 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 VKORC1L1Q8N0U8 176 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 ARL6Q9H0F7 186 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 SLC35D1Q9NTN3 355 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 GAB2Q9UQC2 676 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 TMA7Q9Y2S6 64 aaKnown RBP14.54□□□□□ -0.08
HMGA1-201ENST00000311487 CRYZL1O95825 349 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 IFNA2P01563 188 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 ZNF546Q86UE3 836 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 LURAP1LQ8IV03 231 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 OR5AN1Q8NGI8 311 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 DDB2Q92466 427 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 EAF1Q96JC9 268 aaPredicted RBP14.54□□□□□ -0.08
HMGA1-201ENST00000311487 AKR1E2Q96JD6 320 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 HSD17B10Q99714 261 aaKnown RBP14.54□□□□□ -0.08
HMGA1-201ENST00000311487 NMES1Q9C002 83 aa14.54□□□□□ -0.08
HMGA1-201ENST00000311487 TEX13DA0A0J9YY54 714 aaPredicted RBP14.53□□□□□ -0.08
HMGA1-201ENST00000311487 OOSP1A8MZH6 123 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 MPPED1O15442 326 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 TMEM11P17152 192 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 ARHGDIBP52566 201 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 TAGLNQ01995 201 aaKnown RBP14.53□□□□□ -0.08
HMGA1-201ENST00000311487 SGPP2Q8IWX5 399 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 SPAG16Q8N0X2 631 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 SSMEM1Q8WWF3 244 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 TP53RKQ96S44 253 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 UBQLN2Q9UHD9 624 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 TNFSF18Q9UNG2 199 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 NCBP2LA6PVI3 153 aaKnown RBP14.53□□□□□ -0.08
HMGA1-201ENST00000311487 MPTX1A8MV57 137 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 TXNL1O43396 289 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 CHST1O43916 411 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 FAM106CPP0CH98 169 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 THBS3P49746 956 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 FAM71F2Q6NXP2 309 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 ZNF418Q8TF45 676 aaPredicted RBP14.53□□□□□ -0.08
HMGA1-201ENST00000311487 WASHC3Q9Y3C0 194 aa14.53□□□□□ -0.08
HMGA1-201ENST00000311487 SRRM4A7MD48 611 aaKnown RBP14.52□□□□□ -0.09
HMGA1-201ENST00000311487 RPS16P62249 146 aaKnown RBP14.52□□□□□ -0.09
HMGA1-201ENST00000311487 CYCSP99999 105 aaKnown RBP14.52□□□□□ -0.09
HMGA1-201ENST00000311487 SSX9Q7RTT3 188 aa14.52□□□□□ -0.09
HMGA1-201ENST00000311487 PRDM13Q9H4Q3 707 aa14.52□□□□□ -0.09
HMGA1-201ENST00000311487 TCF19Q9Y242 345 aa14.52□□□□□ -0.09
HMGA1-201ENST00000311487 RPS10-NUDT3A0A1W2PQS6 291 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 FAM90A9PA6NNJ1 464 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 MOSP00540 346 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 APOA2P02652 100 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 F2RP25116 425 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 CD1BP29016 333 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 AP2S1P53680 142 aaPredicted RBP14.51□□□□□ -0.09
HMGA1-201ENST00000311487 SCGB2A2Q13296 93 aa14.51□□□□□ -0.09
HMGA1-201ENST00000311487 HABP2Q14520 560 aaPredicted RBP14.51□□□□□ -0.09
HMGA1-201ENST00000311487 TUSC1Q2TAM9 212 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms