RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 KBTBD11O94819 623 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF343Q6P1L6 599 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 MMD2Q8IY49 270 aa6.61□□□□□ -1.35
SCN9A-201ENST00000303354 RNF212Q495C1 297 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 SLC16A13Q7RTY0 426 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 FGFBP3Q8TAT2 258 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 MRAP2Q96G30 205 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 MARS2Q96GW9 593 aaKnown RBP6.6□□□□□ -1.35
SCN9A-201ENST00000303354 KLF7O75840 302 aaPredicted RBP6.6□□□□□ -1.35
SCN9A-201ENST00000303354 ARL14EPLP0DKL9 152 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 ERVK11-1P61568 191 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 C5orf24Q7Z6I8 188 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 SPAG17Q6Q759 2223 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CORTO00230 105 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CCKARP32238 428 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 FAM162BQ5T6X4 162 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 RUSC1-AS1Q66K80 236 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 ATOH7Q8N100 152 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 NEU4Q8WWR8 484 aaPredicted RBP6.6□□□□□ -1.35
SCN9A-201ENST00000303354 VAX2Q9UIW0 290 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 IGLV1-36A0A0B4J1U3 117 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 MSGN1A6NI15 193 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 AP4M1O00189 453 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF25P17030 456 aaPredicted RBP6.6□□□□□ -1.35
SCN9A-201ENST00000303354 AWAT1Q58HT5 328 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 OR4A47Q6IF82 309 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 HOGA1Q86XE5 327 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 PAM16Q9Y3D7 125 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 NPIPB6E9PJ23 425 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 SGMS2Q8NHU3 365 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 MRPL30Q8TCC3 161 aaKnown RBP6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CBLN4Q9NTU7 201 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 FAM206AQ9NX38 181 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 SEMA5BQ9P283 1151 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CA2P00918 260 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 GTSCR1Q86UQ5 136 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 OR51M1Q9H341 326 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 MANBALQ9NQG1 85 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CRIM1Q9NZV1 1036 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 IGHV1-18A0A0C4DH31 117 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 HKR1P10072 659 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CBLN2Q8IUK8 224 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 C12orf57Q99622 126 aa6.6□□□□□ -1.35
SCN9A-201ENST00000303354 CD1AP06126 327 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 SELLP14151 372 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 EFNB1P98172 346 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 C12orf54Q6X4T0 127 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 ZNF525Q8N782 197 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 PPP1R3EQ9H7J1 279 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 DSPPQ9NZW4 1301 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 LOC107984156A0A0G2JMH3 177 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 RBFOX2O43251 390 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN9A-201ENST00000303354 RPL24P83731 157 aaKnown RBP6.59□□□□□ -1.35
SCN9A-201ENST00000303354 FBLN7Q53RD9 439 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 ASCL4Q6XD76 172 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 ACP7Q6ZNF0 438 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 VMO1Q7Z5L0 202 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 ARL17AQ8IVW1 177 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 COL25A1Q9BXS0 654 aaPredicted RBP6.59□□□□□ -1.35
SCN9A-201ENST00000303354 OR5P3Q8WZ94 311 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 ARPC1AQ92747 370 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 IBA57Q5T440 356 aaKnown RBP6.59□□□□□ -1.35
SCN9A-201ENST00000303354 CD300LDQ6UXZ3 194 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 KLHDC1Q8N7A1 406 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 SCMH1Q96GD3 660 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 C17orf100A8MU93 164 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 SNAI2O43623 268 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 SSBP1Q04837 148 aaKnown RBP6.59□□□□□ -1.35
SCN9A-201ENST00000303354 LINC00596Q86U02 117 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 OPN4Q9UHM6 478 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 CLLU1Q5K131 121 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 IFITM10A6NMD0 228 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 C10orf35Q96D05 121 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 SEC11CQ9BY50 192 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 DPM3Q9P2X0 92 aa6.59□□□□□ -1.35
SCN9A-201ENST00000303354 IGHV3-64A0A075B6Q5 118 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 SMIM10L1P0DMW3 83 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 NDPQ00604 133 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 COL4A6Q14031 1691 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 DNLZQ5SXM8 178 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 C1QTNF12Q5T7M4 302 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 SMIM10Q96HG1 83 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 V9GYH0 126 aa6.59□□□□□ -1.36
SCN9A-201ENST00000303354 DUXBA0A1W2PPF3 345 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 NDUFA2O43678 99 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 CRHP06850 196 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 FGF9P31371 208 aaPredicted RBP6.58□□□□□ -1.36
SCN9A-201ENST00000303354 IL19Q9UHD0 177 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 CFHR3Q02985 330 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 IGFL4Q6B9Z1 124 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 CYB5R2Q6BCY4 276 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 TOLLIPQ9H0E2 274 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 ZNF430Q9H8G1 570 aaPredicted RBP6.58□□□□□ -1.36
SCN9A-201ENST00000303354 SOX21Q9Y651 276 aaPredicted RBP6.58□□□□□ -1.36
SCN9A-201ENST00000303354 IGFBP2P18065 325 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 NPC2P61916 151 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 EIF4EBP2Q13542 120 aaPredicted RBP6.58□□□□□ -1.36
SCN9A-201ENST00000303354 BPIFA4PQ86YQ2 179 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 PRSS22Q9GZN4 317 aa6.58□□□□□ -1.36
SCN9A-201ENST00000303354 TRAV24A0A0B4J272 114 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms