RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ST6GALNAC5Q9BVH7 336 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 ZNF430Q9H8G1 570 aaPredicted RBP11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 LSM2Q9Y333 95 aaKnown RBP11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 FRAS1Q86XX4 4008 aa11.1□□□□□ -0.63
CCDC88B-201ENST00000301897 LOC102724200A0A096LPH7 203 aaPredicted RBP11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 CXorf65A6NEN9 183 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 DENRO43583 198 aaKnown RBP11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 PRH1P02810 166 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 SAA1P0DJI8 122 aaPredicted RBP11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 GADD45AP24522 165 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 PSMA1P25786 263 aaKnown RBP11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 OR4A47Q6IF82 309 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 OR52B4Q8NGK2 314 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 UFD1Q92890 307 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 RAB3CQ96E17 227 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 WDR89Q96FK6 387 aaPredicted RBP11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 OVOL2Q9BRP0 275 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 RAB22AQ9UL26 194 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 PRELID3BQ9Y3B1 194 aa11.09□□□□□ -0.63
CCDC88B-201ENST00000301897 PPP5D1E7EU14 171 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 OR2J3O76001 311 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 SLC22A5O76082 557 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 DHFRP00374 187 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 GSTT2P0CG29 244 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 GSTT2BP0CG30 244 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 CBLN1P23435 193 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 C2orf76Q3KRA6 126 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM91Q6ZNR0 172 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 VSTM2AQ8TAG5 236 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 C5orf30Q96GV9 206 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 TP53TG1Q9Y2A0 90 aa11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 MRPS7Q9Y2R9 242 aaKnown RBP11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 AK6Q9Y3D8 172 aaKnown RBP11.08□□□□□ -0.64
CCDC88B-201ENST00000301897 DPPA5A6NC42 116 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 LINC00473A8K010 186 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 NPIPB5A8MRT5 1133 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 A8MWP6 167 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 PTGES3LE9PB15 166 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 OR2C1O95371 312 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 ATF4P18848 351 aaPredicted RBP11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 ARL3P36405 182 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 TNFRSF9Q07011 255 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 MED22Q15528 200 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 LIPKQ5VXJ0 399 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 Q6ZS49 121 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 WFDC3Q8IUB2 231 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM61Q8N0U2 210 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM203Q969S6 136 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 DCUN1D5Q9BTE7 237 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 FBXL7Q9UJT9 491 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 KLK5Q9Y337 293 aaPredicted RBP11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 DMRT1Q9Y5R6 373 aa11.07□□□□□ -0.64
CCDC88B-201ENST00000301897 TRAV25A0A0B4J276 109 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 HLA-AP01891 365 aaKnown RBP11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 HIST1H1BP16401 226 aaKnown RBP11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 MAS1LP35410 378 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 TALDO1P37837 337 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 APOC4P55056 127 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 PMS2P11Q13670 270 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 IRF3Q14653 427 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 OGFRL1Q5TC84 451 aaPredicted RBP11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 H1FOOQ8IZA3 346 aaPredicted RBP11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 ZNF645Q8N7E2 425 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 MARC2Q969Z3 335 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 EEF1AKMT3Q96AZ1 226 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 SCN3BQ9NY72 215 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 KCNK7Q9Y2U2 307 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 V9GY05 133 aa11.06□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM272A0A1B0GTI8 110 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 ZNF320A2RRD8 509 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 TMEM213A2RRL7 107 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 TEX22C9J3V5 150 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 UBE2CO00762 179 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 CASQ2O14958 399 aaPredicted RBP11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 FCGR3BO75015 233 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 CD36P16671 472 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 CALRP27797 417 aaKnown RBP11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 BMI1P35226 326 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 RPL27AP46776 148 aaKnown RBP11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 CLDN12P56749 244 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 ARFRP1Q13795 201 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 ARL6IP1Q15041 203 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 CEMP1Q6PRD7 247 aaPredicted RBP11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 Q6ZWC4 215 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 KCTD9Q7L273 389 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 UXS1Q8NBZ7 420 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 OR10R2Q8NGX6 335 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 OR51E2Q9H255 320 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 VCXQ9H320 206 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 SLC2A9Q9NRM0 540 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 KMT2AQ03164 3969 aa11.05□□□□□ -0.64
CCDC88B-201ENST00000301897 TRBV7-1A0A0A6YYK4 115 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 METTL21EPA6NDL7 271 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 MFNGO00587 321 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 CTXN2P0C2S0 81 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 HIST1H1DP16402 221 aaKnown RBP11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 GALP22466 123 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 RCN1Q15293 331 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 KLK9Q2XQG4 91 aa11.04□□□□□ -0.64
CCDC88B-201ENST00000301897 TM4SF20Q53R12 229 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms