RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 C9orf172C9J069 976 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 M0R1B8 84 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 IGHMP01871 453 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 UCP1P25874 307 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 NUBP1P53384 320 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 PMCHL1Q16048 86 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 FAM166AQ6J272 317 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 TCF23Q7RTU1 214 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 RNF144BQ7Z419 303 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 OR51G1Q8NGK1 321 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 PRO3102Q9H379 93 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 HEATR5AQ86XA9 2040 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 HEATR1Q9H583 2144 aaKnown RBP13.08□□□□□ -0.32
SHH-201ENST00000297261 MUC22E2RYF6 1773 aaPredicted RBP13.08□□□□□ -0.32
SHH-201ENST00000297261 DPRXA6NFQ7 191 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 MPZP25189 248 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 C19orf35Q6ZS72 473 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 C1QL4Q86Z23 238 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 TGIF2LYQ8IUE0 185 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 GTF3AQ92664 365 aaKnown RBP13.08□□□□□ -0.32
SHH-201ENST00000297261 A0A0G2JMM0 328 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 A0A1W2PPB8 328 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 A0A1W2PRS3 328 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 KIR3DP1A8MWS1 328 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 HLA-DQA1P01909 254 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 CD59P13987 128 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 CRYBB3P26998 211 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 LCN2P80188 198 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 ZBTB34Q8NCN2 500 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 FLYWCH2Q96CP2 140 aaKnown RBP13.08□□□□□ -0.32
SHH-201ENST00000297261 NOTCH3Q9UM47 2321 aa13.08□□□□□ -0.32
SHH-201ENST00000297261 CEACAM1P13688 526 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 OR1L1Q8NH94 360 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 SRXN1Q9BYN0 137 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 ISLRO14498 428 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 RBP4P02753 201 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 PRSS1P07477 247 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 COMPP49747 757 aaPredicted RBP13.07□□□□□ -0.32
SHH-201ENST00000297261 RPL31P62899 125 aaKnown RBP13.07□□□□□ -0.32
SHH-201ENST00000297261 CALHM1Q8IU99 346 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 WDYHV1Q96HA8 205 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 PROB1E7EW31 1015 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 RHBDL1O75783 438 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 CLEC3BP05452 202 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 OR1B1Q8NGR6 318 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 SSBP3Q9BWW4 388 aaPredicted RBP13.07□□□□□ -0.32
SHH-201ENST00000297261 FBLN5Q9UBX5 448 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 KIAA1549LQ6ZVL6 1849 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 LDLRAD4O15165 306 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 NUTF2P61970 127 aaKnown RBP13.07□□□□□ -0.32
SHH-201ENST00000297261 LHFPL1Q86WI0 220 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 DOLPP1Q86YN1 238 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 BMPERQ8N8U9 685 aa13.07□□□□□ -0.32
SHH-201ENST00000297261 TBL2Q9Y4P3 447 aaKnown RBP13.07□□□□□ -0.32
SHH-201ENST00000297261 MKRN2OSH3BPM6 223 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 HIST1H1EP10412 219 aaKnown RBP13.06□□□□□ -0.32
SHH-201ENST00000297261 FAM19A2Q8N3H0 131 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 SAP30LQ9HAJ7 183 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 C1QTNF9BB2RNN3 333 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 SERF1AO75920 110 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 VENTXO95231 258 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 IGHV2-70P01814 119 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 ATP5G3P48201 142 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 LRRC75BQ2VPJ9 315 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 OR10S1Q8NGN2 331 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 TMEM170AQ8WVE7 144 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 TXNDC17Q9BRA2 123 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 MIEN1Q9BRT3 115 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 TMEM140Q9NV12 185 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 DOCK10Q96BY6 2186 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 NPIPB13A6NJU9 1138 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 NPIPB4C9JG80 1138 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 S1PR2O95136 353 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 OR2H2O95918 312 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 HBZP02008 142 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 CD33P20138 364 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 SGK494Q96LW2 274 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 GLRX2Q9NS18 164 aa13.06□□□□□ -0.32
SHH-201ENST00000297261 FER1L5A0AVI2 2057 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 PGPEP1LA6NFU8 196 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 FADS6Q8N9I5 356 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 SIGLEC12Q96PQ1 595 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 DCAF16Q9NXF7 216 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 A6NDN8 102 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 CEBPDP49716 269 aaPredicted RBP13.05□□□□□ -0.32
SHH-201ENST00000297261 C12orf54Q6X4T0 127 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 ABHD12Q8N2K0 398 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 DRAM1Q8N682 238 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 ST6GALNAC6Q969X2 333 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 RAB37Q96AX2 223 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 PROCRQ9UNN8 238 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 LEPROTL1O95214 131 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 PLAUP00749 431 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 CSRP2Q16527 193 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 MUC15Q8N387 334 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 OR8B3Q8NGG8 313 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 TMEM106BQ9NUM4 274 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 PPP1R14DQ9NXH3 145 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 PKDREJQ9NTG1 2253 aa13.05□□□□□ -0.32
SHH-201ENST00000297261 TRBV24-1A0A075B6N3 115 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms