RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 H2BFWTQ7Z2G1 175 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 ODF3L1Q8IXM7 274 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 S1PR3Q99500 378 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 ATP5SQ99766 215 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 C20orf24Q9BUV8 137 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 ARFGEF3Q5TH69 2177 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 USF3Q68DE3 2245 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 LOXP28300 417 aaPredicted RBP12.61□□□□□ -0.39
SF3B4-201ENST00000271628 UBE2KP61086 200 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 C4orf17Q53FE4 359 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 AKR1C8PQ5T2L2 129 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 ISOC2Q96AB3 205 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 RAB39BQ96DA2 213 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 RBMXL1Q96E39 390 aaKnown RBP12.61□□□□□ -0.39
SF3B4-201ENST00000271628 RARRES2Q99969 163 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 HSPB7Q9UBY9 170 aa12.61□□□□□ -0.39
SF3B4-201ENST00000271628 A0A1W2PPH5 198 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 MED19A0JLT2 244 aaPredicted RBP12.6□□□□□ -0.39
SF3B4-201ENST00000271628 MARCH11A6NNE9 402 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 FCGR3BO75015 233 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 IGHV3-7P01780 117 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 HBE1P02100 147 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 DAOP14920 347 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 TNFRSF9Q07011 255 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 ZNF439Q8NDP4 499 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 ADTRPQ96IZ2 230 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 ZNF714Q96N38 554 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 PSENENQ9NZ42 101 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 ANKHD1Q8IWZ3 2542 aaKnown RBP12.6□□□□□ -0.39
SF3B4-201ENST00000271628 FAM90A9PA6NNJ1 464 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 SLC31A2O15432 143 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 EIF3GO75821 320 aaKnown RBP eCLIP12.6□□□□□ -0.39
SF3B4-201ENST00000271628 HSPB1P04792 205 aaKnown RBP12.6□□□□□ -0.39
SF3B4-201ENST00000271628 CCL20P78556 96 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 RPL39P5Q59GN2 51 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 HEPN1Q6WQI6 88 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 FAM24BQ8N5W8 94 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 TMEM217Q8N7C4 229 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 R3HDM4Q96D70 268 aa12.6□□□□□ -0.39
SF3B4-201ENST00000271628 HCFC1P51610 2035 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 A0A1B0GV50 99 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 DVL1O14640 695 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 THBS3P49746 956 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 LINC00205P59089 165 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 MRPS11P82912 194 aaKnown RBP12.59□□□□□ -0.39
SF3B4-201ENST00000271628 LYPD2Q6UXB3 125 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 SLC25A48Q6ZT89 311 aaKnown RBP12.59□□□□□ -0.39
SF3B4-201ENST00000271628 LYG1Q8N1E2 194 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 LEAP2Q969E1 77 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 RAB1BQ9H0U4 201 aa12.59□□□□□ -0.39
SF3B4-201ENST00000271628 METTL1Q9UBP6 276 aaKnown RBP12.59□□□□□ -0.39
SF3B4-201ENST00000271628 PUS1Q9Y606 427 aaKnown RBP eCLIP12.59□□□□□ -0.39
SF3B4-201ENST00000271628 SAA2-SAA4A0A096LPE2 208 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 ZG16O60844 167 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 IFNA5P01569 189 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 SAA2P0DJI9 122 aaPredicted RBP12.58□□□□□ -0.39
SF3B4-201ENST00000271628 CTAG1AP78358 180 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 TMEM200BQ69YZ2 307 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 C1QL4Q86Z23 238 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 OR4S2Q8NH73 311 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 H1FXQ92522 213 aaKnown RBP12.58□□□□□ -0.39
SF3B4-201ENST00000271628 TCEAL7Q9BRU2 100 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 CBLN4Q9NTU7 201 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 RFNGQ9Y644 331 aa12.58□□□□□ -0.39
SF3B4-201ENST00000271628 DIDO1Q9BTC0 2240 aaKnown RBP12.58□□□□□ -0.4
SF3B4-201ENST00000271628 A0A087WWC5 75 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 ARG1P05089 322 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 SRP19P09132 144 aaKnown RBP12.58□□□□□ -0.4
SF3B4-201ENST00000271628 SMIM6P0DI80 62 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 IAPPP10997 89 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 NQO2P16083 231 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 ERVK-16P61578 105 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 HBG1P69891 147 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 HBG2P69892 147 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 ZNF506Q5JVG8 444 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 PRAMEF5Q5TYX0 476 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 ZNF295-AS1Q8N0V1 137 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 DDB2Q92466 427 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 CTSZQ9UBR2 303 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 PKDREJQ9NTG1 2253 aa12.58□□□□□ -0.4
SF3B4-201ENST00000271628 COL6A6A6NMZ7 2263 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 TRAV1-1A0A0B4J248 108 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 A0A1W2PPE3 182 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 H3BP45 60 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 RBMXL2O75526 392 aaKnown RBP12.57□□□□□ -0.4
SF3B4-201ENST00000271628 MMP23AO75900 390 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 OR2C1O95371 312 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 LY86O95711 162 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 S100A9P06702 114 aaKnown RBP12.57□□□□□ -0.4
SF3B4-201ENST00000271628 GNG10P50151 68 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 KHDC3LQ587J8 217 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 FAM122AQ96E09 287 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 CIB3Q96Q77 187 aaPredicted RBP12.57□□□□□ -0.4
SF3B4-201ENST00000271628 ZNF251Q9BRH9 671 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 RBKSQ9H477 322 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 A0A1W2PPE2 198 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 H3BQ15 152 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 FCN3O75636 299 aa12.57□□□□□ -0.4
SF3B4-201ENST00000271628 SCAF4O95104 1147 aaKnown RBP12.57□□□□□ -0.4
SF3B4-201ENST00000271628 IFNA17P01571 189 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms