RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ZNF645Q8N7E2 425 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 SSMEM1Q8WWF3 244 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 NEIL1Q96FI4 390 aaPredicted RBP10.61□□□□□ -0.71
LIG1-201ENST00000263274 CTDSP1Q9GZU7 261 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 PCNX2A6NKB5 2137 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 MKRN2OSH3BPM6 223 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 OR1P1Q8NH06 330 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 OR5R1Q8NH85 324 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 CFAP47Q6ZTR5 3102 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 OTOGLQ3ZCN5 2332 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 IFNL4K9M1U5 179 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 ATP5G3P48201 142 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 CYP2G1PQ6ZSU1 146 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 OR4A16Q8NH70 328 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 KLF14Q8TD94 323 aaPredicted RBP10.6□□□□□ -0.71
LIG1-201ENST00000263274 GPR12P47775 334 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 ZNF766Q5HY98 468 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 RNFT1Q5M7Z0 435 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 OR13A1Q8NGR1 328 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 DERL1Q9BUN8 251 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 SRD5A3Q9H8P0 318 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 ABCA1O95477 2261 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 ZNF705FA8MVS1 300 aaPredicted RBP10.6□□□□□ -0.71
LIG1-201ENST00000263274 C17orf112F2Z3M2 114 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 M0R1X1 148 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 DLEU1O43261 78 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 AMBPP02760 352 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 ZNF705DP0CH99 300 aaPredicted RBP10.6□□□□□ -0.71
LIG1-201ENST00000263274 ZNF705BP0CI00 300 aaPredicted RBP10.6□□□□□ -0.71
LIG1-201ENST00000263274 GCH1P30793 250 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 LEAP2Q969E1 77 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 QTRT1Q9BXR0 403 aaKnown RBP10.6□□□□□ -0.71
LIG1-201ENST00000263274 NPCDR1Q9BY65 106 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 DMXL1Q9Y485 3027 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 ZFHX4Q86UP3 3567 aa10.6□□□□□ -0.71
LIG1-201ENST00000263274 TRBV24-1A0A075B6N3 115 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 IGHV3OR15-7A0A075B7D8 119 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 A0A1B0GUS0 222 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.59□□□□□ -0.71
LIG1-201ENST00000263274 TCF21O43680 179 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 OR4A8P0C604 315 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 THBS3P49746 956 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 ACOT6Q3I5F7 207 aaPredicted RBP10.59□□□□□ -0.71
LIG1-201ENST00000263274 TMEM14EPQ6UXP3 125 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 R3HDM4Q96D70 268 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 PKDREJQ9NTG1 2253 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 OOEPA6NGQ2 149 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 LINC00473A8K010 186 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 SPINK4O60575 86 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 S100A7P31151 101 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 RND2P52198 227 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 PAX5Q02548 391 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 KCNIP4Q6PIL6 250 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 TMEM183AQ8IXX5 376 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 ABHD12Q8N2K0 398 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 SPRR3Q9UBC9 169 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 ARFGEF3Q5TH69 2177 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 TRBV6-6A0A0A6YYG2 114 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 SPINT2O43291 252 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 SOX8P57073 446 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 SAPCD1Q5SSQ6 148 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 OR2Z1Q8NG97 314 aa10.59□□□□□ -0.71
LIG1-201ENST00000263274 HRASP01112 189 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 IGHV1-2P23083 117 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 DEFB108BQ8NET1 73 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 LRRC29Q8WV35 223 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 TRAPPC1Q9Y5R8 145 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 CEP295Q9C0D2 2601 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 PLCE1Q9P212 2302 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 WISP2O76076 250 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 ACTL6BO94805 426 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 PFN1P07737 140 aaKnown RBP10.58□□□□□ -0.72
LIG1-201ENST00000263274 C1QTNF9P0C862 333 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 COL8A2P25067 703 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 MIC13Q5XKP0 118 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 BEND2Q8NDZ0 799 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 FER1L6-AS2Q96M78 137 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 HSPB7Q9UBY9 170 aa10.58□□□□□ -0.72
LIG1-201ENST00000263274 INTS1Q8N201 2190 aaKnown RBP10.57□□□□□ -0.72
LIG1-201ENST00000263274 DVL1O14640 695 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 RPLP1P05386 114 aaKnown RBP10.57□□□□□ -0.72
LIG1-201ENST00000263274 CD33P20138 364 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 ACP1P24666 158 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 CD1BP29016 333 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 ERVK-16P61578 105 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 Q5PR19 223 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 CIB3Q96Q77 187 aaPredicted RBP10.57□□□□□ -0.72
LIG1-201ENST00000263274 MDFIC2A0A1B0GVS7 189 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 LNP1A1A4G5 178 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 OR5I1Q13606 314 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 ATP6V1FQ16864 119 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 TCF23Q7RTU1 214 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 C5orf30Q96GV9 206 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 TMEM242Q9NWH2 141 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 TNCP24821 2201 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 A0A1W2PNU3 283 aaPredicted RBP10.57□□□□□ -0.72
LIG1-201ENST00000263274 RPL39P5Q59GN2 51 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 ARSJQ5FYB0 599 aaPredicted RBP10.57□□□□□ -0.72
LIG1-201ENST00000263274 Q6ZR03 302 aa10.57□□□□□ -0.72
LIG1-201ENST00000263274 SGMS2Q8NHU3 365 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms