RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TRBV24-1A0A075B6N3 115 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 SH2D1BO14796 132 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 CIDEAO60543 219 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 HBZP02008 142 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 PFN1P07737 140 aaKnown RBP8.41□□□□□ -1.06
LIG3-201ENST00000262327 ARG2P78540 354 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 TMEM14EPQ6UXP3 125 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 VKORC1L1Q8N0U8 176 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 BCL2L2Q92843 193 aaPredicted RBP8.41□□□□□ -1.06
LIG3-201ENST00000262327 PKIBQ9C010 78 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 ROS1P08922 2347 aa8.41□□□□□ -1.06
LIG3-201ENST00000262327 ZNF891A8MT65 544 aaPredicted RBP8.4□□□□□ -1.06
LIG3-201ENST00000262327 M0QZK8 103 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 KBTBD11O94819 623 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 NPPCP23582 126 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 EDDM3BP56851 147 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 ERVFC1-1P60608 527 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 PSG7Q13046 419 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 EDDM3AQ14507 147 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 CST9LP1Q5W188 147 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 TEX38Q6PEX7 206 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 LINC00596Q86U02 117 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 LRP11Q86VZ4 500 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 GALMQ96C23 342 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 OR5B12Q96R08 314 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 PATZ1Q9HBE1 687 aaKnown RBP8.4□□□□□ -1.06
LIG3-201ENST00000262327 CDH20Q9HBT6 801 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 MSL2Q9HCI7 577 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 DNAJC4Q9NNZ3 241 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 KCNIP1Q9NZI2 227 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 HEATR1Q9H583 2144 aaKnown RBP8.4□□□□□ -1.06
LIG3-201ENST00000262327 LINC00473A8K010 186 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 PPP5D1E7EU14 171 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 SMPD2O60906 423 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 GYPAP02724 150 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 GNB2P62879 340 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 OR5I1Q13606 314 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 RNF151Q2KHN1 245 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 TBC1D28Q2M2D7 210 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 CYP2G1PQ6ZSU1 146 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 OR10P1Q8NGE3 313 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 PINX1Q96BK5 328 aaKnown RBP8.4□□□□□ -1.06
LIG3-201ENST00000262327 P2RX4Q99571 388 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 SPRR3Q9UBC9 169 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 PITPNC1Q9UKF7 332 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 PSG11Q9UQ72 335 aa8.4□□□□□ -1.06
LIG3-201ENST00000262327 YLPM1P49750 1951 aaKnown RBP8.4□□□□□ -1.07
LIG3-201ENST00000262327 LRRC30A6NM36 301 aa8.4□□□□□ -1.07
LIG3-201ENST00000262327 ATP5G3P48201 142 aa8.4□□□□□ -1.07
LIG3-201ENST00000262327 FABP6P51161 128 aa8.4□□□□□ -1.07
LIG3-201ENST00000262327 OR1P1Q8NH06 330 aa8.4□□□□□ -1.07
LIG3-201ENST00000262327 GP6Q9HCN6 339 aa8.4□□□□□ -1.07
LIG3-201ENST00000262327 CNOT1A5YKK6 2376 aaKnown RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 NKX2-8O15522 239 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 IRF2P14316 349 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 ERVK11-1P61568 191 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 H2BFWTQ7Z2G1 175 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 ZNF645Q8N7E2 425 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 NINJ1Q92982 152 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 NPCDR1Q9BY65 106 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 HIPK2Q9H2X6 1198 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 SRD5A3Q9H8P0 318 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 TMEM242Q9NWH2 141 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 HSPB7Q9UBY9 170 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 CTXND1A0A1B0GTU2 59 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 GGCTO75223 188 aaKnown RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 SP1P08047 785 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 FAM78BQ5VT40 261 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 ZNF705AQ6ZN79 300 aaPredicted RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 TMEM183AQ8IXX5 376 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 ZNF709Q8N972 641 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 CNEP1R1Q8N9A8 125 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 OR13A1Q8NGR1 328 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 RNASEH2CQ8TDP1 164 aaKnown RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 COQ2Q96H96 371 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 QTRT1Q9BXR0 403 aaKnown RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 MBNL3Q9NUK0 354 aaKnown RBP8.39□□□□□ -1.07
LIG3-201ENST00000262327 POLDIP2Q9Y2S7 368 aa8.39□□□□□ -1.07
LIG3-201ENST00000262327 C11orf94C9JXX5 98 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 MLNRO43193 412 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 CD33P20138 364 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 HOXC12P31275 282 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 UBE2NP61088 152 aaKnown RBP8.38□□□□□ -1.07
LIG3-201ENST00000262327 PAX5Q02548 391 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 PMS2P11Q13670 270 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 ZNF114Q8NC26 417 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 TMEM147Q9BVK8 224 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 KLF13Q9Y2Y9 288 aaPredicted RBP8.38□□□□□ -1.07
LIG3-201ENST00000262327 PMS2P5A8MQ11 134 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 NPIPB11E5RHQ5 1161 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 C1QTNF9P0C862 333 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 TGFBR3Q03167 851 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 MSMO1Q15800 293 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 BATFQ16520 125 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 MOB1BQ7L9L4 216 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 MDS2Q8NDY4 140 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 CTDSP1Q9GZU7 261 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 RPH3ALQ9UNE2 315 aa8.38□□□□□ -1.07
LIG3-201ENST00000262327 TMEM30CPA0ZSE6 113 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms