RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 A0A1W2PRX2 142 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 M0R381 172 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 SMIM13P0DJ93 91 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 MUC21Q5SSG8 566 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 AHRRA9YTQ3 701 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 AGAP20933 346 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 ZP4Q12836 540 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 CLPPQ16740 277 aaPredicted RBP12.25□□□□□ -0.45
CUX2-201ENST00000261726 ZNF324BQ6AW86 544 aaPredicted RBP12.25□□□□□ -0.45
CUX2-201ENST00000261726 DNASE2BQ8WZ79 361 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 RNF115Q9Y4L5 304 aa12.25□□□□□ -0.45
CUX2-201ENST00000261726 FCARP24071 287 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 PDLIM4P50479 330 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 LCN2P80188 198 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 KCNE5Q9UJ90 142 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 TMEM95Q3KNT9 176 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 DLL3Q9NYJ7 618 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 MARCH11A6NNE9 402 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 CD160O95971 181 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 VAX1Q5SQQ9 334 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 NPIPB11E5RHQ5 1161 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 PRSS23O95084 383 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 TRGV3P03979 118 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 ASAH2BP0C7U1 165 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 ZNF501Q96CX3 271 aaPredicted RBP12.24□□□□□ -0.45
CUX2-201ENST00000261726 SFRP2Q96HF1 295 aa12.24□□□□□ -0.45
CUX2-201ENST00000261726 IGKV3D-20A0A0C4DH25 116 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 TNFRSF9Q07011 255 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 ST6GALNAC3Q8NDV1 305 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 DUX3Q96PT4 197 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 SPAG8Q99932 426 aaPredicted RBP12.23□□□□□ -0.45
CUX2-201ENST00000261726 CBLN4Q9NTU7 201 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 PTP4A3O75365 173 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 CD69Q07108 199 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 C1QTNF12Q5T7M4 302 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 HOXD4P09016 255 aaPredicted RBP12.23□□□□□ -0.45
CUX2-201ENST00000261726 HSPE1P61604 102 aaKnown RBP12.23□□□□□ -0.45
CUX2-201ENST00000261726 ATP1A1-AS1Q5TC04 95 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 LINC00305Q7Z4B0 112 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 SPSB4Q96A44 273 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 SNAI2O43623 268 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 CD1AP06126 327 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 RPS11P62280 158 aaKnown RBP eCLIP12.23□□□□□ -0.45
CUX2-201ENST00000261726 NPIPB3Q92617 1050 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 PLAC1Q9HBJ0 212 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 TRIP11Q15643 1979 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 C1QTNF9BB2RNN3 333 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 P2RY4P51582 365 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 PRELID3AQ96N28 172 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 CLEC7AQ9BXN2 247 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 IGHV1-69-2A0A0G2JMI3 117 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 ZNF98A6NK75 572 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 RRHO14718 337 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 GLIPR1P48060 266 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 IRF3Q14653 427 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 C2orf88Q9BSF0 95 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 SMDT1Q9H4I9 107 aa12.23□□□□□ -0.45
CUX2-201ENST00000261726 MYO7AQ13402 2215 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 ATG2BQ96BY7 2078 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 A1L4Q6 167 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 ACSF3Q4G176 576 aaPredicted RBP12.22□□□□□ -0.45
CUX2-201ENST00000261726 LINC01560Q8TB33 94 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 KLF14Q8TD94 323 aaPredicted RBP12.22□□□□□ -0.45
CUX2-201ENST00000261726 PLXNA1Q9UIW2 1896 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 SMRP1Q8NCR6 262 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 NPFFR1Q9GZQ6 430 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 JKAMPQ9P055 326 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 C1QCP02747 245 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 TDGF1P13385 188 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 STARD6P59095 220 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 AMELYQ99218 206 aa12.22□□□□□ -0.45
CUX2-201ENST00000261726 EP400Q96L91 3159 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 A0A1W2PQM1 296 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 NDUFA2O43678 99 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 DXOO77932 396 aaKnown RBP12.21□□□□□ -0.45
CUX2-201ENST00000261726 TSPAN7P41732 249 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 TGIF1Q15583 401 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 FHL5Q5TD97 284 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 TRAV24A0A0B4J272 114 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 TRBV7-9A0A0J9YWB2 115 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 ICAM4Q14773 271 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 KCNS1Q96KK3 526 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 NABP2Q9BQ15 211 aa12.21□□□□□ -0.45
CUX2-201ENST00000261726 LIPFP07098 398 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 EGR1P18146 543 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 NUTF2P61970 127 aaKnown RBP12.21□□□□□ -0.46
CUX2-201ENST00000261726 MEF2CQ06413 473 aaPredicted RBP12.21□□□□□ -0.46
CUX2-201ENST00000261726 UNQ9370/PRO34162Q6UXP9 181 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 OR9G1Q8NH87 305 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 DDA1Q9BW61 102 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 ELF5Q9UKW6 265 aaPredicted RBP12.21□□□□□ -0.46
CUX2-201ENST00000261726 KNTC1P50748 2209 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 PAPPA-AS1Q5QFB9 102 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 CDCP2Q5VXM1 449 aa12.21□□□□□ -0.46
CUX2-201ENST00000261726 PUSL1Q8N0Z8 303 aaKnown RBP12.21□□□□□ -0.46
CUX2-201ENST00000261726 OR11H12B2RN74 326 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 OR11H1Q8NG94 326 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 OR11H2Q8NH07 326 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 ZNF414Q96IQ9 312 aa12.2□□□□□ -0.46
CUX2-201ENST00000261726 PROB1E7EW31 1015 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms