RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 UBE2NP61088 152 aaKnown RBP12.04□□□□□ -0.48
SDC1-201ENST00000254351 RANP62826 216 aaKnown RBP12.04□□□□□ -0.48
SDC1-201ENST00000254351 RAC1P63000 192 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 RELBQ01201 579 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 H2BFWTQ7Z2G1 175 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 CPT1CQ8TCG5 803 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 KIAA1549Q9HCM3 1950 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 LRRC30A6NM36 301 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 PAFAH1B2P68402 229 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 FOXL1Q12952 345 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 Q56UQ5 140 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 C17orf82Q86X59 251 aaPredicted RBP12.04□□□□□ -0.48
SDC1-201ENST00000254351 MMD2Q8IY49 270 aa12.04□□□□□ -0.48
SDC1-201ENST00000254351 CDIPTO14735 213 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 MRPL33O75394 65 aaKnown RBP12.03□□□□□ -0.48
SDC1-201ENST00000254351 MGST1P10620 155 aaKnown RBP12.03□□□□□ -0.48
SDC1-201ENST00000254351 RNPS1Q15287 305 aaKnown RBP12.03□□□□□ -0.48
SDC1-201ENST00000254351 VAMP3Q15836 100 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 OR4C5Q8NGB2 326 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 REPIN1Q9BWE0 567 aaKnown RBP12.03□□□□□ -0.48
SDC1-201ENST00000254351 ARFGEF3Q5TH69 2177 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 PDE6DO43924 150 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 OR2H2O95918 312 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 GPX1P07203 203 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 RAC3P60763 192 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 VPS25Q9BRG1 176 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 HINT2Q9BX68 163 aa12.03□□□□□ -0.48
SDC1-201ENST00000254351 ZNF716A6NP11 495 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 H0Y8G0 127 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 IGLV3-19P01714 112 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 CD1BP29016 333 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 GFRA1P56159 465 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 PCBD1P61457 104 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 VHLLQ6RSH7 139 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 ABHD12Q8N2K0 398 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 FAM122AQ96E09 287 aa12.02□□□□□ -0.48
SDC1-201ENST00000254351 ALKBH7Q9BT30 221 aaPredicted RBP12.02□□□□□ -0.48
SDC1-201ENST00000254351 SEPSECSQ9HD40 501 aaKnown RBP12.02□□□□□ -0.48
SDC1-201ENST00000254351 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.02□□□□□ -0.48
SDC1-201ENST00000254351 TDGF1P13385 188 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 SSR4P51571 173 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 AESQ08117 197 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 C3AR1Q16581 482 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 SSBP3Q9BWW4 388 aaPredicted RBP12.02□□□□□ -0.49
SDC1-201ENST00000254351 BOD1L1Q8NFC6 3051 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 C17orf112F2Z3M2 114 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 C3orf79P0CE67 100 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 ZNF83P51522 516 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 CCL7P80098 99 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 ANKRD39Q53RE8 183 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 RPS19BP1Q86WX3 136 aaKnown RBP12.02□□□□□ -0.49
SDC1-201ENST00000254351 MRGPRDQ8TDS7 321 aa12.02□□□□□ -0.49
SDC1-201ENST00000254351 DPRXA6NFQ7 191 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 ANKRD30BLA7E2S9 258 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 GDF1P27539 372 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 NXPH1P58417 271 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 RABEPKQ7Z6M1 372 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 C1orf174Q8IYL3 243 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 C5orf30Q96GV9 206 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 C1QTNF5Q9BXJ0 243 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 C12orf49Q9H741 205 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 HEYLQ9NQ87 328 aaPredicted RBP12.01□□□□□ -0.49
SDC1-201ENST00000254351 UQCR10Q9UDW1 63 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 SMG1Q96Q15 3661 aaKnown RBP12.01□□□□□ -0.49
SDC1-201ENST00000254351 A0A1W2PQM1 296 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 LRP5LA4QPB2 252 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 NXPH2O95156 264 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 IGLC2P0DOY2 106 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 IGLC3P0DOY3 106 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 RAC2P15153 192 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 HES3Q5TGS1 186 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 TUSC5Q8IXB3 177 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 CLCF1Q9UBD9 225 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 HSPB7Q9UBY9 170 aa12.01□□□□□ -0.49
SDC1-201ENST00000254351 ABCA1O95477 2261 aa12□□□□□ -0.49
SDC1-201ENST00000254351 A0A1W2PS18 150 aa12□□□□□ -0.49
SDC1-201ENST00000254351 PMCHL1Q16048 86 aa12□□□□□ -0.49
SDC1-201ENST00000254351 WDR74Q6RFH5 385 aaPredicted RBP12□□□□□ -0.49
SDC1-201ENST00000254351 PQLC2Q6ZP29 291 aa12□□□□□ -0.49
SDC1-201ENST00000254351 ARL6IP6Q8N6S5 226 aa12□□□□□ -0.49
SDC1-201ENST00000254351 OR2M7Q8NG81 312 aa12□□□□□ -0.49
SDC1-201ENST00000254351 OR4B1Q8NGF8 309 aa12□□□□□ -0.49
SDC1-201ENST00000254351 OR4P4Q8NGL7 312 aa12□□□□□ -0.49
SDC1-201ENST00000254351 RNF2Q99496 336 aa12□□□□□ -0.49
SDC1-201ENST00000254351 DCTN5Q9BTE1 182 aa12□□□□□ -0.49
SDC1-201ENST00000254351 MCRIP2Q9BUT9 160 aaKnown RBP12□□□□□ -0.49
SDC1-201ENST00000254351 CHRNA10Q9GZZ6 450 aa12□□□□□ -0.49
SDC1-201ENST00000254351 IGLV3-12A0A075B6K2 115 aa12□□□□□ -0.49
SDC1-201ENST00000254351 PMS2P5A8MQ11 134 aa12□□□□□ -0.49
SDC1-201ENST00000254351 C10orf142B7Z368 130 aa12□□□□□ -0.49
SDC1-201ENST00000254351 GPR6P46095 362 aaPredicted RBP12□□□□□ -0.49
SDC1-201ENST00000254351 YPEL3P61236 119 aaPredicted RBP12□□□□□ -0.49
SDC1-201ENST00000254351 Q6ZS49 121 aa12□□□□□ -0.49
SDC1-201ENST00000254351 ZNF826PQ6ZT77 177 aa12□□□□□ -0.49
SDC1-201ENST00000254351 RNF138Q8WVD3 245 aa12□□□□□ -0.49
SDC1-201ENST00000254351 PARD6GQ9BYG4 376 aaPredicted RBP12□□□□□ -0.49
SDC1-201ENST00000254351 TIMM9Q9Y5J7 89 aa12□□□□□ -0.49
SDC1-201ENST00000254351 CFAP47Q6ZTR5 3102 aa12□□□□□ -0.49
SDC1-201ENST00000254351 WNT9BO14905 357 aa12□□□□□ -0.49
SDC1-201ENST00000254351 CGAP01215 116 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms