RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 APCP25054 2843 aa18.5■□□□□ 0.55
CDX1-201ENST00000231656 KIR2DS2P43631 304 aa18.5■□□□□ 0.55
CDX1-201ENST00000231656 HAPLN4Q86UW8 402 aa18.5■□□□□ 0.55
CDX1-201ENST00000231656 H1FXQ92522 213 aaKnown RBP18.5■□□□□ 0.55
CDX1-201ENST00000231656 TSNAXQ99598 290 aaKnown RBP18.5■□□□□ 0.55
CDX1-201ENST00000231656 GAL3ST2Q9H3Q3 398 aa18.5■□□□□ 0.55
CDX1-201ENST00000231656 NARFLQ9H6Q4 476 aa18.5■□□□□ 0.55
CDX1-201ENST00000231656 PAX1P15863 534 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 PDLIM4P50479 330 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 RAB5CP51148 216 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 ARL16Q0P5N6 197 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 TMEM200BQ69YZ2 307 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 SLC25A48Q6ZT89 311 aaKnown RBP18.49■□□□□ 0.55
CDX1-201ENST00000231656 OR8B3Q8NGG8 313 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 NEIL1Q96FI4 390 aaPredicted RBP18.49■□□□□ 0.55
CDX1-201ENST00000231656 OR8B2Q96RD0 313 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 S1PR3Q99500 378 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 PRELID3BQ9Y3B1 194 aa18.49■□□□□ 0.55
CDX1-201ENST00000231656 SCO1O75880 301 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 DFFBO76075 338 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 METTL15P1P0C7V9 234 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 GNG10P50151 68 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 F2RL1P55085 397 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 LYG1Q8N1E2 194 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 PERPQ96FX8 193 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 PATZ1Q9HBE1 687 aaKnown RBP18.48■□□□□ 0.55
CDX1-201ENST00000231656 NUP50Q9UKX7 468 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 STRAPQ9Y3F4 350 aaKnown RBP18.48■□□□□ 0.55
CDX1-201ENST00000231656 RFNGQ9Y644 331 aa18.48■□□□□ 0.55
CDX1-201ENST00000231656 FAM90A9PA6NNJ1 464 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 OR9G9P0C7N8 305 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 THBS3P49746 956 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 SRSF3P84103 164 aaKnown RBP18.47■□□□□ 0.55
CDX1-201ENST00000231656 AARDQ4LEZ3 155 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 TMEM14EPQ6UXP3 125 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 ZNF714Q96N38 554 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 BPESC1Q9GZL8 116 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 CCL3L1P16619 93 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 SPANXN5Q5MJ07 72 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 HEPN1Q6WQI6 88 aa18.47■□□□□ 0.55
CDX1-201ENST00000231656 TMEM182Q6ZP80 229 aaPredicted RBP18.47■□□□□ 0.55
CDX1-201ENST00000231656 ERVFRD-1P60508 538 aa18.46■□□□□ 0.55
CDX1-201ENST00000231656 WDR25Q64LD2 544 aaPredicted RBP18.46■□□□□ 0.55
CDX1-201ENST00000231656 OR2G3Q8NGZ4 309 aa18.46■□□□□ 0.55
CDX1-201ENST00000231656 GNPNAT1Q96EK6 184 aaPredicted RBP18.46■□□□□ 0.55
CDX1-201ENST00000231656 TRIM77I1YAP6 450 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 GPR37O15354 613 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 CAMLGP49069 296 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 FHITP49789 147 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 ARHGDIBP52566 201 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 ZNF383Q8NA42 475 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 OR4S2Q8NH73 311 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 FAM168AQ92567 244 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 ADTRPQ96IZ2 230 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 MAP1AP78559 2803 aaPredicted RBP18.45■□□□□ 0.54
CDX1-201ENST00000231656 TMEM218A2RU14 115 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 CRYZL1O95825 349 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 NQO2P16083 231 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 AKR1C1Q04828 323 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 OR4C12Q96R67 309 aa18.45■□□□□ 0.54
CDX1-201ENST00000231656 QTRT1Q9BXR0 403 aaKnown RBP18.45■□□□□ 0.54
CDX1-201ENST00000231656 TRBV23-1A0A0A0MS06 115 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 HBG1P69891 147 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 HBG2P69892 147 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 RUNX1Q01196 453 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 NAV2Q8IVL1 2488 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 DTD1Q8TEA8 209 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 ZDHHC16Q969W1 377 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 NARS2Q96I59 477 aaKnown RBP18.44■□□□□ 0.54
CDX1-201ENST00000231656 ZNRD1Q9P1U0 126 aa18.44■□□□□ 0.54
CDX1-201ENST00000231656 UMAD1C9J7I0 102 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 PRH1P02810 166 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 DLX6P56179 175 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 ERVK-16P61578 105 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 CLEC2AQ6UVW9 174 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 C10orf105Q8TEF2 133 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 ARHGAP32A7KAX9 2087 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 MED13LQ71F56 2210 aa18.43■□□□□ 0.54
CDX1-201ENST00000231656 NDUFS8O00217 210 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 IFNA5P01569 189 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 OR2B8PP59922 312 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 GNB2P62879 340 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 ZNF616Q08AN1 781 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 SSX9Q7RTT3 188 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 VKORC1L1Q8N0U8 176 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 CIB3Q96Q77 187 aaPredicted RBP18.42■□□□□ 0.54
CDX1-201ENST00000231656 PIMREGQ9BSJ6 248 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 SSBP3Q9BWW4 388 aaPredicted RBP18.42■□□□□ 0.54
CDX1-201ENST00000231656 RBMXL2O75526 392 aaKnown RBP18.42■□□□□ 0.54
CDX1-201ENST00000231656 IGHV2-5P01817 119 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 ZNF833PQ6ZTB9 187 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 FAM213BQ8TBF2 198 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 TMEM231Q9H6L2 316 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 TMEM140Q9NV12 185 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 FAM96BQ9Y3D0 163 aa18.42■□□□□ 0.54
CDX1-201ENST00000231656 TET2Q6N021 2002 aaPredicted RBP18.42■□□□□ 0.54
CDX1-201ENST00000231656 PMS2P5A8MQ11 134 aa18.41■□□□□ 0.54
CDX1-201ENST00000231656 TSPAN15O95858 294 aa18.41■□□□□ 0.54
CDX1-201ENST00000231656 CT45A6P0DMU7 189 aa18.41■□□□□ 0.54
CDX1-201ENST00000231656 CT45A5P0DMU8 189 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms