RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ANOS1P23352 680 aa11.58□□□□□ -0.56
SF3A1-201ENST00000215793 C2orf68Q2NKX9 166 aa11.58□□□□□ -0.56
SF3A1-201ENST00000215793 NHLRC3Q5JS37 347 aa11.58□□□□□ -0.56
SF3A1-201ENST00000215793 NABP2Q9BQ15 211 aa11.58□□□□□ -0.56
SF3A1-201ENST00000215793 FOXD3Q9UJU5 478 aaPredicted RBP11.58□□□□□ -0.56
SF3A1-201ENST00000215793 COL24A1Q17RW2 1714 aa11.58□□□□□ -0.56
SF3A1-201ENST00000215793 LOC105371242A0A075B767 164 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 CD8AP01732 235 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 CRYBB3P26998 211 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 OR11H4Q8NGC9 324 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 ELOVL5Q9NYP7 299 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.57□□□□□ -0.56
SF3A1-201ENST00000215793 TRBV9A0A0B4J1U6 114 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 NPIPB11E5RHQ5 1161 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 ERVH48-1M5A8F1 160 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 SRSF12Q8WXF0 261 aaKnown RBP11.57□□□□□ -0.56
SF3A1-201ENST00000215793 GDF9O60383 454 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 TSPOP30536 169 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 CX3CL1P78423 397 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 TIMM23BQ5SRD1 257 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 PGLYRP4Q96LB8 373 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 UQCR10Q9UDW1 63 aa11.57□□□□□ -0.56
SF3A1-201ENST00000215793 RGPD4Q7Z3J3 1758 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 RAX2Q96IS3 184 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 PARLQ9H300 379 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 AKAP6Q13023 2319 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 TRGC1P0CF51 173 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 RELQ04864 619 aaPredicted RBP11.56□□□□□ -0.56
SF3A1-201ENST00000215793 NRN1LQ496H8 165 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 ASPHD2Q6ICH7 369 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 LY75O60449 1722 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 FOLR2P14207 255 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 ZNF708P17019 499 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 CRYBA2P53672 197 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 ATP5G2Q06055 141 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 ADIPOQQ15848 244 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 NPIPB3Q92617 1050 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 SHANK3Q9BYB0 1731 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 SNRNP200O75643 2136 aaKnown RBP11.56□□□□□ -0.56
SF3A1-201ENST00000215793 EPOPA6NHQ4 379 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 UBE2L6O14933 153 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 NUDT3O95989 172 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 NPPCP23582 126 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 OR10AG1Q8NH19 301 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 MARVELD3Q96A59 401 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 TMEM74BQ9NUR3 256 aa11.56□□□□□ -0.56
SF3A1-201ENST00000215793 FOXH1O75593 365 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 SPATA45Q537H7 98 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 LEAP2Q969E1 77 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 UBR3Q6ZT12 1888 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 CGB1A6NKQ9 187 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 FABP2P12104 132 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 RARRES2Q99969 163 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 NPIPB9F8W1W9 429 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 TIAF1O95411 115 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 FXYD3Q14802 87 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 HERPUD1Q15011 391 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 SAPCD1Q5SSQ6 148 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 OSR1Q8TAX0 266 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-201ENST00000215793 SH3BGRL3Q9H299 93 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 CHCHD2Q9Y6H1 151 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-201ENST00000215793 C9orf172C9J069 976 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 ZNF883P0CG24 379 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 SRIP30626 198 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 WDR25Q64LD2 544 aaPredicted RBP11.55□□□□□ -0.56
SF3A1-201ENST00000215793 ADAMTSL1Q8N6G6 1762 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 TM2D1Q9BX74 207 aa11.55□□□□□ -0.56
SF3A1-201ENST00000215793 GAGE10A6NGK3 116 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 PRR19A6NJB7 356 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 VENTXO95231 258 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 HLA-DRB1P01911 266 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 ATP5J2P56134 94 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 SLC25A34Q6PIV7 304 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 EEF1AKMT3Q96AZ1 226 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 GPR61Q9BZJ8 451 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 ZNF703Q9H7S9 590 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-201ENST00000215793 GCHFRP30047 84 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 TNFSF10P50591 281 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 PAPPA-AS1Q5QFB9 102 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 GGACTQ9BVM4 153 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 IGKV3D-11A0A0A0MRZ8 115 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 TGIF2-C20orf24A0A0A6YYL0 155 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 LOC101059948A0A1B0GTJ6 334 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 ZIC3O60481 467 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 GPX1P07203 203 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 PDLIM4P50479 330 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 ZNF385CQ66K41 422 aaPredicted RBP11.54□□□□□ -0.56
SF3A1-201ENST00000215793 PNKDQ8N490 385 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 CHODLQ9H9P2 273 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 COPS9Q8WXC6 57 aa11.54□□□□□ -0.56
SF3A1-201ENST00000215793 THSD7AQ9UPZ6 1657 aa11.53□□□□□ -0.56
SF3A1-201ENST00000215793 FBLL1A6NHQ2 334 aaKnown RBP11.53□□□□□ -0.56
SF3A1-201ENST00000215793 ATP1A1-AS1Q5TC04 95 aa11.53□□□□□ -0.56
SF3A1-201ENST00000215793 HIST1H2BAQ96A08 127 aa11.53□□□□□ -0.56
SF3A1-201ENST00000215793 GDF15Q99988 308 aa11.53□□□□□ -0.56
SF3A1-201ENST00000215793 RBFOX2O43251 390 aaKnown RBP eCLIP11.53□□□□□ -0.56
SF3A1-201ENST00000215793 THY1P04216 161 aa11.53□□□□□ -0.56
SF3A1-201ENST00000215793 APOBEC3AP31941 199 aaPredicted RBP11.53□□□□□ -0.56
SF3A1-201ENST00000215793 CDX1P47902 265 aaPredicted RBP11.53□□□□□ -0.56
SF3A1-201ENST00000215793 OR4A47Q6IF82 309 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms