RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 TDRD3Q9H7E2 651 aaKnown RBP10.93□□□□□ -0.66
LINC00339-212ENST00000642072 CACNA1FO60840 1977 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 GRM8O00222 908 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 GYG1P46976 350 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 UBE4AQ14139 1066 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 LDHAL6AQ6ZMR3 332 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 DZIP1LQ8IYY4 767 aaKnown RBP10.92□□□□□ -0.66
LINC00339-212ENST00000642072 FAM43AQ8N2R8 423 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 KAZALD1Q96I82 304 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 TMEM39BQ9GZU3 492 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 TTF2Q9UNY4 1162 aaKnown RBP10.92□□□□□ -0.66
LINC00339-212ENST00000642072 PTCH2Q9Y6C5 1203 aa10.92□□□□□ -0.66
LINC00339-212ENST00000642072 CCL15-CCL14A0A0B4J2E2 113 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 SPDYE5A6NIY4 337 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 CRKP46108 304 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 GTF2A2P52657 109 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 RBM5P52756 815 aaKnown RBP eCLIP10.91□□□□□ -0.66
LINC00339-212ENST00000642072 MAP3K9P80192 1104 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 TAF1CQ15572 869 aaPredicted RBP10.91□□□□□ -0.66
LINC00339-212ENST00000642072 CCL15Q16663 113 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 CCDC57Q2TAC2 916 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 CHMP3Q9Y3E7 222 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 SNCAIPQ9Y6H5 919 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 COL6A3P12111 3177 aa10.91□□□□□ -0.66
LINC00339-212ENST00000642072 TCP10L2B9ZVM9 353 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 PLIN1O60240 522 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 HIBADHP31937 336 aaKnown RBP10.9□□□□□ -0.66
LINC00339-212ENST00000642072 EXOSC9Q06265 439 aaKnown RBP10.9□□□□□ -0.66
LINC00339-212ENST00000642072 SLC9C1Q4G0N8 1177 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 FBXO33Q7Z6M2 555 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 OTUD5Q96G74 571 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 PUS3Q9BZE2 481 aaKnown RBP10.9□□□□□ -0.66
LINC00339-212ENST00000642072 ARHGAP39Q9C0H5 1083 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 ZFYVE28Q9HCC9 887 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 SPINK5Q9NQ38 1064 aaPredicted RBP10.9□□□□□ -0.66
LINC00339-212ENST00000642072 CNNM1Q9NRU3 951 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 COLQQ9Y215 455 aaPredicted RBP10.9□□□□□ -0.66
LINC00339-212ENST00000642072 RIPOR2Q9Y4F9 1068 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 ZSWIM8A7E2V4 1837 aa10.9□□□□□ -0.66
LINC00339-212ENST00000642072 TLR2O60603 784 aa10.89□□□□□ -0.67
LINC00339-212ENST00000642072 HDLBPQ00341 1268 aaKnown RBP10.89□□□□□ -0.67
LINC00339-212ENST00000642072 VGLL2Q8N8G2 317 aa10.89□□□□□ -0.67
LINC00339-212ENST00000642072 TMEM106CQ9BVX2 250 aa10.89□□□□□ -0.67
LINC00339-212ENST00000642072 ZCCHC17Q9NP64 241 aaKnown RBP10.89□□□□□ -0.67
LINC00339-212ENST00000642072 UTYO14607 1347 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 CUL9Q8IWT3 2517 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 BTBD19C9JJ37 291 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 ALDH1L1O75891 902 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 CTGFP29279 349 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 CACNB3P54284 484 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 LACTBP83111 547 aaPredicted RBP10.88□□□□□ -0.67
LINC00339-212ENST00000642072 RABL6Q3YEC7 729 aaPredicted RBP10.88□□□□□ -0.67
LINC00339-212ENST00000642072 TAF7LQ5H9L4 462 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 NBPF11Q86T75 865 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 WDR63Q8IWG1 891 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 SUCLG2Q96I99 432 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 ZDHHC15Q96MV8 337 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 CSADQ9Y600 493 aa10.88□□□□□ -0.67
LINC00339-212ENST00000642072 RPAP1Q9BWH6 1393 aaPredicted RBP10.88□□□□□ -0.67
LINC00339-212ENST00000642072 MROH5Q6ZUA9 1318 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 ADGRA2Q96PE1 1338 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 H0YGN5 161 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 IRF6O14896 467 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 NBPF7P0C2Y1 421 aaPredicted RBP10.87□□□□□ -0.67
LINC00339-212ENST00000642072 CETPP11597 493 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 TNNI2P48788 182 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 ARHGEF6Q15052 776 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 FKBP1CQ5VVH2 108 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 APOBEC3HQ6NTF7 200 aaKnown RBP10.87□□□□□ -0.67
LINC00339-212ENST00000642072 FAM83AQ86UY5 434 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 ERO1BQ86YB8 467 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 SH3TC2Q8TF17 1288 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 ZKSCAN4Q969J2 545 aaPredicted RBP10.87□□□□□ -0.67
LINC00339-212ENST00000642072 SHISA4Q96DD7 197 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 MRIQ9BWK5 157 aa10.87□□□□□ -0.67
LINC00339-212ENST00000642072 GNRH1P01148 92 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 PPIL2Q13356 520 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 MOGSQ13724 837 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 C17orf99Q6UX52 265 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 UBE2Q1Q7Z7E8 422 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 ANKRD44Q8N8A2 993 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 TBC1D22AQ8WUA7 517 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 TEKT1Q969V4 418 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 WRNIP1Q96S55 665 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 SRCIN1Q9C0H9 1055 aa10.86□□□□□ -0.67
LINC00339-212ENST00000642072 C9orf78Q9NZ63 289 aaPredicted RBP10.86□□□□□ -0.67
LINC00339-212ENST00000642072 IQSEC3Q9UPP2 1182 aaPredicted RBP10.86□□□□□ -0.67
LINC00339-212ENST00000642072 MYCP01106 439 aaPredicted RBP10.85□□□□□ -0.67
LINC00339-212ENST00000642072 PRMT2P55345 433 aa10.85□□□□□ -0.67
LINC00339-212ENST00000642072 SNAPC2Q13487 334 aa10.85□□□□□ -0.67
LINC00339-212ENST00000642072 SLC4A8Q2Y0W8 1093 aa10.85□□□□□ -0.67
LINC00339-212ENST00000642072 LRRC24Q50LG9 513 aa10.85□□□□□ -0.67
LINC00339-212ENST00000642072 TRIM47Q96LD4 638 aa10.85□□□□□ -0.67
LINC00339-212ENST00000642072 BICC1Q9H694 974 aaKnown RBP10.85□□□□□ -0.67
LINC00339-212ENST00000642072 KIF16BQ96L93 1317 aa10.84□□□□□ -0.67
LINC00339-212ENST00000642072 PDE8BO95263 885 aa10.84□□□□□ -0.67
LINC00339-212ENST00000642072 FGFR2P21802 821 aa10.84□□□□□ -0.67
LINC00339-212ENST00000642072 INPP5BP32019 993 aa10.84□□□□□ -0.67
LINC00339-212ENST00000642072 PPATQ06203 517 aa10.84□□□□□ -0.67
LINC00339-212ENST00000642072 CHAF1AQ13111 956 aaPredicted RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms