RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SPDYE2BA6NHP3 402 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 RASSF10A6NK89 507 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 SPDYE6P0CI01 402 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 RASGRF1Q13972 1273 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 SCARF1Q14162 830 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 SPTY2D1Q68D10 685 aaPredicted RBP22.44■■□□□ 1.18
CLN3-259ENST00000637551 HHIPL2Q6UWX4 724 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 CLASRPQ8N2M8 674 aaKnown RBP22.44■■□□□ 1.18
CLN3-259ENST00000637551 GGA3Q9NZ52 723 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 TTF2Q9UNY4 1162 aaKnown RBP22.44■■□□□ 1.18
CLN3-259ENST00000637551 EXOC6BQ9Y2D4 811 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 PPP2R3BQ9Y5P8 575 aa22.44■■□□□ 1.18
CLN3-259ENST00000637551 KRT26Q7Z3Y9 468 aa22.43■■□□□ 1.18
CLN3-259ENST00000637551 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.43■■□□□ 1.18
CLN3-259ENST00000637551 MAP2K1Q02750 393 aaPredicted RBP22.42■■□□□ 1.18
CLN3-259ENST00000637551 CHAF1AQ13111 956 aaPredicted RBP22.42■■□□□ 1.18
CLN3-259ENST00000637551 DEFB115Q30KQ5 88 aa22.42■■□□□ 1.18
CLN3-259ENST00000637551 TEKT1Q969V4 418 aa22.42■■□□□ 1.18
CLN3-259ENST00000637551 ZDHHC15Q96MV8 337 aa22.42■■□□□ 1.18
CLN3-259ENST00000637551 DCTPP1Q9H773 170 aa22.42■■□□□ 1.18
CLN3-259ENST00000637551 IQSEC3Q9UPP2 1182 aaPredicted RBP22.42■■□□□ 1.18
CLN3-259ENST00000637551 MAST2Q6P0Q8 1798 aa22.41■■□□□ 1.18
CLN3-259ENST00000637551 CFAP100Q494V2 611 aa22.41■■□□□ 1.18
CLN3-259ENST00000637551 RBM26Q5T8P6 1007 aaKnown RBP22.41■■□□□ 1.18
CLN3-259ENST00000637551 SLF2Q8IX21 1173 aa22.41■■□□□ 1.18
CLN3-259ENST00000637551 SPATA5Q8NB90 893 aa22.41■■□□□ 1.18
CLN3-259ENST00000637551 EAF2Q96CJ1 260 aaPredicted RBP22.41■■□□□ 1.18
CLN3-259ENST00000637551 DBNLQ9UJU6 430 aaKnown RBP22.41■■□□□ 1.18
CLN3-259ENST00000637551 WDR33Q9C0J8 1336 aaKnown RBP22.4■■□□□ 1.18
CLN3-259ENST00000637551 LDHBP07195 334 aaKnown RBP22.4■■□□□ 1.18
CLN3-259ENST00000637551 TNFAIP1Q13829 316 aa22.4■■□□□ 1.18
CLN3-259ENST00000637551 NBPF9Q3BBW0 867 aa22.4■■□□□ 1.18
CLN3-259ENST00000637551 ANGEL2Q5VTE6 544 aaKnown RBP22.4■■□□□ 1.18
CLN3-259ENST00000637551 FKBP1CQ5VVH2 108 aa22.4■■□□□ 1.18
CLN3-259ENST00000637551 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.4■■□□□ 1.18
CLN3-259ENST00000637551 HHIPL1Q96JK4 782 aa22.4■■□□□ 1.18
CLN3-259ENST00000637551 CRBNQ96SW2 442 aa22.4■■□□□ 1.18
CLN3-259ENST00000637551 CCDC85CA6NKD9 419 aa22.39■■□□□ 1.17
CLN3-259ENST00000637551 CRKP46108 304 aa22.39■■□□□ 1.17
CLN3-259ENST00000637551 FKBP1BP68106 108 aa22.39■■□□□ 1.17
CLN3-259ENST00000637551 HDAC1Q13547 482 aaPredicted RBP22.39■■□□□ 1.17
CLN3-259ENST00000637551 DBNDD2Q9BQY9 259 aa22.39■■□□□ 1.17
CLN3-259ENST00000637551 LRRCC1Q9C099 1032 aa22.39■■□□□ 1.17
CLN3-259ENST00000637551 HMG20BQ9P0W2 317 aa22.39■■□□□ 1.17
CLN3-259ENST00000637551 MYH2Q9UKX2 1941 aa22.38■■□□□ 1.17
CLN3-259ENST00000637551 MAP4K4O95819 1239 aaPredicted RBP22.38■■□□□ 1.17
CLN3-259ENST00000637551 SPDYE2Q495Y8 402 aa22.38■■□□□ 1.17
CLN3-259ENST00000637551 TTC39AQ5SRH9 613 aa22.38■■□□□ 1.17
CLN3-259ENST00000637551 AACSQ86V21 672 aa22.38■■□□□ 1.17
CLN3-259ENST00000637551 FAM163AQ96GL9 167 aaPredicted RBP22.38■■□□□ 1.17
CLN3-259ENST00000637551 GLIS2Q9BZE0 524 aaPredicted RBP22.38■■□□□ 1.17
CLN3-259ENST00000637551 JAG2Q9Y219 1238 aa22.38■■□□□ 1.17
CLN3-259ENST00000637551 PAPPA2Q9BXP8 1791 aa22.38■■□□□ 1.17
CLN3-259ENST00000637551 MCAMP43121 646 aa22.37■■□□□ 1.17
CLN3-259ENST00000637551 PCDHB15Q9Y5E8 787 aa22.37■■□□□ 1.17
CLN3-259ENST00000637551 DOCK2Q92608 1830 aa22.36■■□□□ 1.17
CLN3-259ENST00000637551 GAKO14976 1311 aa22.36■■□□□ 1.17
CLN3-259ENST00000637551 F8W031 263 aaPredicted RBP22.36■■□□□ 1.17
CLN3-259ENST00000637551 SUPT16HQ9Y5B9 1047 aaKnown RBP22.36■■□□□ 1.17
CLN3-259ENST00000637551 RPAP1Q9BWH6 1393 aaPredicted RBP22.36■■□□□ 1.17
CLN3-259ENST00000637551 IFIT2P09913 472 aaKnown RBP22.35■■□□□ 1.17
CLN3-259ENST00000637551 PRDX5P30044 214 aa22.35■■□□□ 1.17
CLN3-259ENST00000637551 GSTO1P78417 241 aa22.35■■□□□ 1.17
CLN3-259ENST00000637551 USP48Q86UV5 1035 aa22.35■■□□□ 1.17
CLN3-259ENST00000637551 GCC1Q96CN9 775 aa22.35■■□□□ 1.17
CLN3-259ENST00000637551 PRMT6Q96LA8 375 aaPredicted RBP22.35■■□□□ 1.17
CLN3-259ENST00000637551 RBM5P52756 815 aaKnown RBP eCLIP22.34■■□□□ 1.17
CLN3-259ENST00000637551 ERICH6Q7L0X2 663 aa22.34■■□□□ 1.17
CLN3-259ENST00000637551 UNCXA6NJT0 531 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 TRAF5O00463 557 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 CELF2O95319 508 aaKnown RBP22.33■■□□□ 1.17
CLN3-259ENST00000637551 NF2P35240 595 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 GRIK5Q16478 980 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 CST9Q5W186 159 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 APOBEC3HQ6NTF7 200 aaKnown RBP22.33■■□□□ 1.17
CLN3-259ENST00000637551 FAM83AQ86UY5 434 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 DZIP1Q86YF9 867 aaKnown RBP22.33■■□□□ 1.17
CLN3-259ENST00000637551 CERS3Q8IU89 383 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 IL1RAPL2Q9NP60 686 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 TMOD2Q9NZR1 351 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 TLL2Q9Y6L7 1015 aa22.33■■□□□ 1.17
CLN3-259ENST00000637551 ASTN2O75129 1339 aaPredicted RBP22.32■■□□□ 1.16
CLN3-259ENST00000637551 LDHCP07864 332 aa22.32■■□□□ 1.16
CLN3-259ENST00000637551 TNNI2P48788 182 aa22.32■■□□□ 1.16
CLN3-259ENST00000637551 TTF1Q15361 905 aaPredicted RBP22.32■■□□□ 1.16
CLN3-259ENST00000637551 CDCA5Q96FF9 252 aa22.32■■□□□ 1.16
CLN3-259ENST00000637551 CCDC8Q9H0W5 538 aaPredicted RBP22.32■■□□□ 1.16
CLN3-259ENST00000637551 TLR7Q9NYK1 1049 aaKnown RBP22.32■■□□□ 1.16
CLN3-259ENST00000637551 ZNF70Q9UC06 446 aaPredicted RBP22.32■■□□□ 1.16
CLN3-259ENST00000637551 ABT1Q9ULW3 272 aaKnown RBP22.32■■□□□ 1.16
CLN3-259ENST00000637551 DAGLAQ9Y4D2 1042 aa22.32■■□□□ 1.16
CLN3-259ENST00000637551 THSD7BQ9C0I4 1608 aa22.31■■□□□ 1.16
CLN3-259ENST00000637551 ADM5C9JUS6 153 aa22.31■■□□□ 1.16
CLN3-259ENST00000637551 DEFB129Q9H1M3 183 aa22.31■■□□□ 1.16
CLN3-259ENST00000637551 ABCF2Q9UG63 623 aa22.31■■□□□ 1.16
CLN3-259ENST00000637551 NPM3O75607 178 aaKnown RBP22.3■■□□□ 1.16
CLN3-259ENST00000637551 SAPCD2Q86UD0 394 aa22.3■■□□□ 1.16
CLN3-259ENST00000637551 C2orf69Q8N8R5 385 aa22.3■■□□□ 1.16
CLN3-259ENST00000637551 HOOK2Q96ED9 719 aa22.3■■□□□ 1.16
CLN3-259ENST00000637551 GBA2Q9HCG7 927 aaPredicted RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms