RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 IL25Q9H293 177 aa24.84■■□□□ 1.57
CLN3-245ENST00000636172 ZNF532Q9HCE3 1301 aa24.84■■□□□ 1.57
CLN3-245ENST00000636172 FKBP1AP62942 108 aaKnown RBP24.83■■□□□ 1.57
CLN3-245ENST00000636172 UBE3CQ15386 1083 aa24.83■■□□□ 1.57
CLN3-245ENST00000636172 NSUN4Q96CB9 384 aaKnown RBP24.83■■□□□ 1.57
CLN3-245ENST00000636172 ESYT1Q9BSJ8 1104 aa24.83■■□□□ 1.57
CLN3-245ENST00000636172 DCAF8L1A6NGE4 600 aa24.82■■□□□ 1.56
CLN3-245ENST00000636172 PSMD14O00487 310 aa24.82■■□□□ 1.56
CLN3-245ENST00000636172 YY1P25490 414 aa24.82■■□□□ 1.56
CLN3-245ENST00000636172 SUGT1Q9Y2Z0 365 aa24.82■■□□□ 1.56
CLN3-245ENST00000636172 FZD9O00144 591 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 GRIN3BO60391 1043 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 IGSF3O75054 1194 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 CXCL9Q07325 125 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 DZIP1Q86YF9 867 aaKnown RBP24.81■■□□□ 1.56
CLN3-245ENST00000636172 APPBP2Q92624 585 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 SEC62Q99442 399 aaKnown RBP24.81■■□□□ 1.56
CLN3-245ENST00000636172 TIAM2Q8IVF5 1701 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 SGSM2O43147 1006 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 VIL1P09327 827 aaKnown RBP24.81■■□□□ 1.56
CLN3-245ENST00000636172 NAA16Q6N069 864 aaPredicted RBP24.81■■□□□ 1.56
CLN3-245ENST00000636172 RUFY2Q8WXA3 655 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 OSBP2Q969R2 916 aa24.81■■□□□ 1.56
CLN3-245ENST00000636172 SEC24BO95487 1268 aa24.8■■□□□ 1.56
CLN3-245ENST00000636172 CYP7A1P22680 504 aa24.8■■□□□ 1.56
CLN3-245ENST00000636172 ADGRA1Q86SQ6 560 aa24.8■■□□□ 1.56
CLN3-245ENST00000636172 HELLSQ9NRZ9 838 aa24.8■■□□□ 1.56
CLN3-245ENST00000636172 RAD50Q92878 1312 aa24.8■■□□□ 1.56
CLN3-245ENST00000636172 MYH2Q9UKX2 1941 aa24.79■■□□□ 1.56
CLN3-245ENST00000636172 CIAPIN1Q6FI81 312 aa24.79■■□□□ 1.56
CLN3-245ENST00000636172 RSBN1LQ6PCB5 846 aaPredicted RBP24.79■■□□□ 1.56
CLN3-245ENST00000636172 PUS7LQ9H0K6 701 aaKnown RBP24.79■■□□□ 1.56
CLN3-245ENST00000636172 MAST3O60307 1309 aa24.79■■□□□ 1.56
CLN3-245ENST00000636172 M0R2C6 588 aa24.78■■□□□ 1.56
CLN3-245ENST00000636172 DIXDC1Q155Q3 683 aa24.78■■□□□ 1.56
CLN3-245ENST00000636172 MCMDC2Q4G0Z9 681 aa24.78■■□□□ 1.56
CLN3-245ENST00000636172 TMED8Q6PL24 325 aaPredicted RBP24.78■■□□□ 1.56
CLN3-245ENST00000636172 ZNF589Q86UQ0 364 aaPredicted RBP24.78■■□□□ 1.56
CLN3-245ENST00000636172 RNF181Q9P0P0 153 aa24.78■■□□□ 1.56
CLN3-245ENST00000636172 F8W031 263 aaPredicted RBP24.77■■□□□ 1.56
CLN3-245ENST00000636172 TTF2Q9UNY4 1162 aaKnown RBP24.77■■□□□ 1.56
CLN3-245ENST00000636172 MYO3BQ8WXR4 1341 aa24.77■■□□□ 1.56
CLN3-245ENST00000636172 EIF6P56537 245 aaKnown RBP24.76■■□□□ 1.55
CLN3-245ENST00000636172 GSTO1P78417 241 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 TNIP1Q15025 636 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 C9orf131Q5VYM1 1079 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 CCDC129Q6ZRS4 1044 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 KIAA0825Q8IV33 1275 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 GMLQ99445 158 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 ZNF541Q9H0D2 1346 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 ADAMTSL1Q8N6G6 1762 aa24.76■■□□□ 1.55
CLN3-245ENST00000636172 ZBTB12Q9Y330 459 aaPredicted RBP24.76■■□□□ 1.55
CLN3-245ENST00000636172 MIGA1Q8NAN2 632 aa24.75■■□□□ 1.55
CLN3-245ENST00000636172 MROH7-TTC4A0A0A0MT08 1334 aa24.75■■□□□ 1.55
CLN3-245ENST00000636172 MFAP1P55081 439 aaKnown RBP24.74■■□□□ 1.55
CLN3-245ENST00000636172 AGBL3Q8NEM8 1001 aa24.74■■□□□ 1.55
CLN3-245ENST00000636172 CCDC171Q6TFL3 1326 aa24.74■■□□□ 1.55
CLN3-245ENST00000636172 GAKO14976 1311 aa24.73■■□□□ 1.55
CLN3-245ENST00000636172 GPAA1O43292 621 aa24.73■■□□□ 1.55
CLN3-245ENST00000636172 MBD4O95243 580 aa24.73■■□□□ 1.55
CLN3-245ENST00000636172 SCNN1DP51172 638 aa24.73■■□□□ 1.55
CLN3-245ENST00000636172 LDHCP07864 332 aa24.72■■□□□ 1.55
CLN3-245ENST00000636172 SLF2Q8IX21 1173 aa24.72■■□□□ 1.55
CLN3-245ENST00000636172 AIDAQ96BJ3 306 aa24.72■■□□□ 1.55
CLN3-245ENST00000636172 FAM163AQ96GL9 167 aaPredicted RBP24.72■■□□□ 1.55
CLN3-245ENST00000636172 RIOK1Q9BRS2 568 aaKnown RBP24.72■■□□□ 1.55
CLN3-245ENST00000636172 MAGEB6P1A0A0J9YX57 407 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 REC8O95072 547 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 LCORLQ8N3X6 602 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 ARMT1Q9H993 441 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 ANO2Q9NQ90 1003 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 DAGLAQ9Y4D2 1042 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 GJA3Q9Y6H8 435 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 EIF5BO60841 1220 aaKnown RBP24.71■■□□□ 1.55
CLN3-245ENST00000636172 DYNLL1P63167 89 aaKnown RBP24.71■■□□□ 1.55
CLN3-245ENST00000636172 HDLBPQ00341 1268 aaKnown RBP24.71■■□□□ 1.55
CLN3-245ENST00000636172 HHIPL2Q6UWX4 724 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 TEKT1Q969V4 418 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 STRBPQ96SI9 672 aaKnown RBP24.71■■□□□ 1.55
CLN3-245ENST00000636172 MRIQ9BWK5 157 aa24.71■■□□□ 1.55
CLN3-245ENST00000636172 LSG1Q9H089 658 aaKnown RBP24.71■■□□□ 1.55
CLN3-245ENST00000636172 AATFQ9NY61 560 aaKnown RBP eCLIP24.71■■□□□ 1.55
CLN3-245ENST00000636172 RPS12P25398 132 aaKnown RBP24.7■■□□□ 1.54
CLN3-245ENST00000636172 CRKP46108 304 aa24.7■■□□□ 1.54
CLN3-245ENST00000636172 SERPINA10Q9UK55 444 aa24.7■■□□□ 1.54
CLN3-245ENST00000636172 GPR75-ASB3A0A0A6YYF3 556 aa24.69■■□□□ 1.54
CLN3-245ENST00000636172 GMPSP49915 693 aaPredicted RBP24.69■■□□□ 1.54
CLN3-245ENST00000636172 PTH1RQ03431 593 aa24.69■■□□□ 1.54
CLN3-245ENST00000636172 VPS53Q5VIR6 699 aa24.69■■□□□ 1.54
CLN3-245ENST00000636172 KIAA1211Q6ZU35 1233 aa24.69■■□□□ 1.54
CLN3-245ENST00000636172 USP17L8P0C7I0 530 aa24.68■■□□□ 1.54
CLN3-245ENST00000636172 BTDP43251 543 aa24.68■■□□□ 1.54
CLN3-245ENST00000636172 PPP4CP60510 307 aa24.68■■□□□ 1.54
CLN3-245ENST00000636172 GPC2Q8N158 579 aa24.68■■□□□ 1.54
CLN3-245ENST00000636172 FOXP2O15409 715 aa24.67■■□□□ 1.54
CLN3-245ENST00000636172 ZDHHC15Q96MV8 337 aa24.67■■□□□ 1.54
CLN3-245ENST00000636172 USP26Q9BXU7 913 aa24.67■■□□□ 1.54
CLN3-245ENST00000636172 ZC3H4Q9UPT8 1303 aaKnown RBP24.67■■□□□ 1.54
CLN3-245ENST00000636172 BAG3O95817 575 aa24.66■■□□□ 1.54
CLN3-245ENST00000636172 HSPD1P10809 573 aaKnown RBP24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms