RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 ZBTB12Q9Y330 459 aaPredicted RBP17.83■□□□□ 0.45
LIMS3-206ENST00000631420 RFX7Q2KHR2 1363 aa17.83■□□□□ 0.44
LIMS3-206ENST00000631420 ZFYP08048 801 aaPredicted RBP17.83■□□□□ 0.44
LIMS3-206ENST00000631420 FKBP1AP62942 108 aaKnown RBP17.83■□□□□ 0.44
LIMS3-206ENST00000631420 UBE3CQ15386 1083 aa17.83■□□□□ 0.44
LIMS3-206ENST00000631420 DIXDC1Q155Q3 683 aa17.83■□□□□ 0.44
LIMS3-206ENST00000631420 C9orf131Q5VYM1 1079 aa17.83■□□□□ 0.44
LIMS3-206ENST00000631420 NAA16Q6N069 864 aaPredicted RBP17.83■□□□□ 0.44
LIMS3-206ENST00000631420 RSBN1LQ6PCB5 846 aaPredicted RBP17.83■□□□□ 0.44
LIMS3-206ENST00000631420 ESYT1Q9BSJ8 1104 aa17.83■□□□□ 0.44
LIMS3-206ENST00000631420 PUS7LQ9H0K6 701 aaKnown RBP17.83■□□□□ 0.44
LIMS3-206ENST00000631420 M0R2C6 588 aa17.82■□□□□ 0.44
LIMS3-206ENST00000631420 LRRFIP1Q32MZ4 808 aaKnown RBP17.82■□□□□ 0.44
LIMS3-206ENST00000631420 CASC1Q6TDU7 716 aa17.82■□□□□ 0.44
LIMS3-206ENST00000631420 CCDC129Q6ZRS4 1044 aa17.82■□□□□ 0.44
LIMS3-206ENST00000631420 TICAM2Q86XR7 235 aa17.82■□□□□ 0.44
LIMS3-206ENST00000631420 DZIP1Q86YF9 867 aaKnown RBP17.82■□□□□ 0.44
LIMS3-206ENST00000631420 KIAA0825Q8IV33 1275 aa17.82■□□□□ 0.44
LIMS3-206ENST00000631420 APPBP2Q92624 585 aa17.82■□□□□ 0.44
LIMS3-206ENST00000631420 TTF2Q9UNY4 1162 aaKnown RBP17.82■□□□□ 0.44
LIMS3-206ENST00000631420 MYO5AQ9Y4I1 1855 aaKnown RBP17.81■□□□□ 0.44
LIMS3-206ENST00000631420 SGSM2O43147 1006 aa17.81■□□□□ 0.44
LIMS3-206ENST00000631420 EIF6P56537 245 aaKnown RBP17.81■□□□□ 0.44
LIMS3-206ENST00000631420 ZNF589Q86UQ0 364 aaPredicted RBP17.81■□□□□ 0.44
LIMS3-206ENST00000631420 HELLSQ9NRZ9 838 aa17.81■□□□□ 0.44
LIMS3-206ENST00000631420 SUGT1Q9Y2Z0 365 aa17.81■□□□□ 0.44
LIMS3-206ENST00000631420 ZNF541Q9H0D2 1346 aa17.81■□□□□ 0.44
LIMS3-206ENST00000631420 SCNN1DP51172 638 aa17.8■□□□□ 0.44
LIMS3-206ENST00000631420 MCMDC2Q4G0Z9 681 aa17.8■□□□□ 0.44
LIMS3-206ENST00000631420 MIGA1Q8NAN2 632 aa17.8■□□□□ 0.44
LIMS3-206ENST00000631420 GMLQ99445 158 aa17.8■□□□□ 0.44
LIMS3-206ENST00000631420 MAST3O60307 1309 aa17.8■□□□□ 0.44
LIMS3-206ENST00000631420 MYH13Q9UKX3 1938 aa17.8■□□□□ 0.44
LIMS3-206ENST00000631420 TNIP1Q15025 636 aa17.79■□□□□ 0.44
LIMS3-206ENST00000631420 RUFY2Q8WXA3 655 aa17.79■□□□□ 0.44
LIMS3-206ENST00000631420 GJA3Q9Y6H8 435 aa17.79■□□□□ 0.44
LIMS3-206ENST00000631420 DYNLL1P63167 89 aaKnown RBP17.79■□□□□ 0.44
LIMS3-206ENST00000631420 MFAP1P55081 439 aaKnown RBP17.78■□□□□ 0.44
LIMS3-206ENST00000631420 PCDHAC2Q9Y5I4 1007 aa17.78■□□□□ 0.44
LIMS3-206ENST00000631420 DOCK2Q92608 1830 aa17.78■□□□□ 0.44
LIMS3-206ENST00000631420 AK9Q5TCS8 1911 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 GPAA1O43292 621 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 IGSF3O75054 1194 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 MBD4O95243 580 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 GSTO1P78417 241 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 AGBL3Q8NEM8 1001 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 ARMT1Q9H993 441 aa17.77■□□□□ 0.44
LIMS3-206ENST00000631420 AATFQ9NY61 560 aaKnown RBP eCLIP17.77■□□□□ 0.44
LIMS3-206ENST00000631420 MYO3BQ8WXR4 1341 aa17.77■□□□□ 0.43
LIMS3-206ENST00000631420 CCDC88AQ3V6T2 1871 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 SHTN1A0MZ66 631 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 LDHCP07864 332 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 CRKP46108 304 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 PTH1RQ03431 593 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 VPS53Q5VIR6 699 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 LCORLQ8N3X6 602 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 FAM163AQ96GL9 167 aaPredicted RBP17.76■□□□□ 0.43
LIMS3-206ENST00000631420 RIOK1Q9BRS2 568 aaKnown RBP17.76■□□□□ 0.43
LIMS3-206ENST00000631420 DAGLAQ9Y4D2 1042 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 MROH7-TTC4A0A0A0MT08 1334 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 ZNF646O15015 1829 aaPredicted RBP17.76■□□□□ 0.43
LIMS3-206ENST00000631420 SBF1O95248 1867 aa17.76■□□□□ 0.43
LIMS3-206ENST00000631420 MAGEB6P1A0A0J9YX57 407 aa17.75■□□□□ 0.43
LIMS3-206ENST00000631420 GAKO14976 1311 aa17.75■□□□□ 0.43
LIMS3-206ENST00000631420 GMPSP49915 693 aaPredicted RBP17.75■□□□□ 0.43
LIMS3-206ENST00000631420 CCDC171Q6TFL3 1326 aa17.75■□□□□ 0.43
LIMS3-206ENST00000631420 RAD50Q92878 1312 aa17.75■□□□□ 0.43
LIMS3-206ENST00000631420 AIDAQ96BJ3 306 aa17.75■□□□□ 0.43
LIMS3-206ENST00000631420 STRBPQ96SI9 672 aaKnown RBP17.75■□□□□ 0.43
LIMS3-206ENST00000631420 ANO2Q9NQ90 1003 aa17.75■□□□□ 0.43
LIMS3-206ENST00000631420 GPR75-ASB3A0A0A6YYF3 556 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 PRKAB2O43741 272 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 DDNO94850 711 aaPredicted RBP17.74■□□□□ 0.43
LIMS3-206ENST00000631420 USP17L8P0C7I0 530 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 BTDP43251 543 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 HHIPL2Q6UWX4 724 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 SLF2Q8IX21 1173 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 TEKT1Q969V4 418 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 MRIQ9BWK5 157 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 LSG1Q9H089 658 aaKnown RBP17.74■□□□□ 0.43
LIMS3-206ENST00000631420 FOXP2O15409 715 aa17.74■□□□□ 0.43
LIMS3-206ENST00000631420 RBM5P52756 815 aaKnown RBP eCLIP17.74■□□□□ 0.43
LIMS3-206ENST00000631420 TMED8Q6PL24 325 aaPredicted RBP17.74■□□□□ 0.43
LIMS3-206ENST00000631420 RPS12P25398 132 aaKnown RBP17.73■□□□□ 0.43
LIMS3-206ENST00000631420 PPP4CP60510 307 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 HDLBPQ00341 1268 aaKnown RBP17.73■□□□□ 0.43
LIMS3-206ENST00000631420 CFAP100Q494V2 611 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 APOBEC3HQ6NTF7 200 aaKnown RBP17.73■□□□□ 0.43
LIMS3-206ENST00000631420 KIAA1211Q6ZU35 1233 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 GPC2Q8N158 579 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 SH3RF3Q8TEJ3 882 aaPredicted RBP17.73■□□□□ 0.43
LIMS3-206ENST00000631420 DPF2Q92785 391 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 USP26Q9BXU7 913 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 SERPINA10Q9UK55 444 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 HDAC9Q9UKV0 1011 aa17.73■□□□□ 0.43
LIMS3-206ENST00000631420 BAG3O95817 575 aa17.72■□□□□ 0.43
LIMS3-206ENST00000631420 HSPD1P10809 573 aaKnown RBP17.72■□□□□ 0.43
LIMS3-206ENST00000631420 OGFOD1Q8N543 542 aa17.72■□□□□ 0.43
LIMS3-206ENST00000631420 ZDHHC15Q96MV8 337 aa17.72■□□□□ 0.43
LIMS3-206ENST00000631420 CNOT7Q9UIV1 285 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms