RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 CPLX1O14810 134 aa10.07□□□□□ -0.8
VCL-207ENST00000624354 FBXO18Q8NFZ0 1043 aa10.07□□□□□ -0.8
VCL-207ENST00000624354 CWC25Q9NXE8 425 aaPredicted RBP10.07□□□□□ -0.8
VCL-207ENST00000624354 ORC3Q9UBD5 711 aaPredicted RBP10.07□□□□□ -0.8
VCL-207ENST00000624354 A0A1B0GUL7 405 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 EYA2O00167 538 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 CABP4P57796 275 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 ELF2Q15723 593 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 MYSM1Q5VVJ2 828 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 CAMTA1Q9Y6Y1 1673 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 KLF18A0A0U1RQI7 1052 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 PSDA5PKW4 1024 aaPredicted RBP10.06□□□□□ -0.8
VCL-207ENST00000624354 ZNF202O95125 648 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 E4F1Q66K89 784 aaPredicted RBP10.06□□□□□ -0.8
VCL-207ENST00000624354 C5P01031 1676 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 UTRNP46939 3433 aa10.06□□□□□ -0.8
VCL-207ENST00000624354 GOLGA8BA8MQT2 603 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 M0R2C6 588 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 BIN1O00499 593 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 TUBB4AP04350 444 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 NLRP12P59046 1061 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 FKBP4Q02790 459 aaKnown RBP eCLIP10.05□□□□□ -0.8
VCL-207ENST00000624354 WASHC4Q2M389 1173 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 OSBP2Q969R2 916 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 GPHNQ9NQX3 736 aaPredicted RBP10.05□□□□□ -0.8
VCL-207ENST00000624354 PRC1O43663 620 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 KCNJ6P48051 423 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 HAND2P61296 217 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 LRRC24Q50LG9 513 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 CCDC158Q5M9N0 1113 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 TEX35Q5T0J7 233 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 GORABQ5T7V8 394 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 BRINP3Q76B58 766 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 RALYLQ86SE5 291 aaKnown RBP10.05□□□□□ -0.8
VCL-207ENST00000624354 PPP1R13BQ96KQ4 1090 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.05□□□□□ -0.8
VCL-207ENST00000624354 CEP126Q9P2H0 1117 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 ZFYP08048 801 aaPredicted RBP10.05□□□□□ -0.8
VCL-207ENST00000624354 ARMCX5Q6P1M9 558 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.05□□□□□ -0.8
VCL-207ENST00000624354 RASSF4Q9H2L5 321 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 RSPH14Q9UHP6 348 aa10.05□□□□□ -0.8
VCL-207ENST00000624354 UBAP1LF5GYI3 381 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 CYP27B1O15528 508 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 CMA1P23946 247 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 ANO1Q5XXA6 986 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 SYT10Q6XYQ8 523 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 ZNF594Q96JF6 807 aaPredicted RBP10.04□□□□□ -0.8
VCL-207ENST00000624354 L2HGDHQ9H9P8 463 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 NPHP1O15259 732 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 CIAO1O76071 339 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 TTC39AQ5SRH9 613 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 CADPS2Q86UW7 1296 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 HOMER1Q86YM7 354 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 NCOA7Q8NI08 942 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 ATG3Q9NT62 314 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 IKBKBO14920 756 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 CCP110O43303 1012 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 FGAP02671 866 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 CHRM1P11229 460 aaPredicted RBP10.04□□□□□ -0.8
VCL-207ENST00000624354 PFKFB1P16118 471 aa10.04□□□□□ -0.8
VCL-207ENST00000624354 LMOD1P29536 600 aaPredicted RBP10.04□□□□□ -0.8
VCL-207ENST00000624354 MEGF6O75095 1541 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 FANCCQ00597 558 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 KIF23Q02241 960 aaPredicted RBP10.03□□□□□ -0.8
VCL-207ENST00000624354 TXLNBQ8N3L3 684 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 CCDC191Q8NCU4 936 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 YY1AP1Q9H869 796 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 ZNF446Q9NWS9 450 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 NEDD4P46934 1319 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 ABCC6O95255 1503 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 NBPF26B4DH59 902 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 ZNF213O14771 459 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 NCAPHQ15003 741 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 AXDND1Q5T1B0 1012 aaPredicted RBP10.03□□□□□ -0.8
VCL-207ENST00000624354 NBPF14Q5TI25 921 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 NBPF10Q6P3W6 841 aaKnown RBP10.03□□□□□ -0.8
VCL-207ENST00000624354 TTLL7Q6ZT98 887 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 MB21D2Q8IYB1 491 aaPredicted RBP10.03□□□□□ -0.8
VCL-207ENST00000624354 NBPF15Q8N660 670 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 SECISBP2LQ93073 1101 aaKnown RBP10.03□□□□□ -0.8
VCL-207ENST00000624354 HPS5Q9UPZ3 1129 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 AKAP2Q9Y2D5 859 aa10.03□□□□□ -0.8
VCL-207ENST00000624354 SYKP43405 635 aa10.02□□□□□ -0.8
VCL-207ENST00000624354 RAB11FIP4Q86YS3 637 aa10.02□□□□□ -0.8
VCL-207ENST00000624354 JMYQ8N9B5 988 aa10.02□□□□□ -0.8
VCL-207ENST00000624354 PUS3Q9BZE2 481 aaKnown RBP10.02□□□□□ -0.8
VCL-207ENST00000624354 GJB4Q9NTQ9 266 aa10.02□□□□□ -0.8
VCL-207ENST00000624354 KIF28PB7ZC32 967 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 CBFA2T2O43439 604 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 MARCKSP29966 332 aaPredicted RBP10.02□□□□□ -0.81
VCL-207ENST00000624354 TRDNQ13061 729 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 SLC39A14Q15043 492 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 ERCC6LQ2NKX8 1250 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 CCDC57Q2TAC2 916 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 ISM2Q6H9L7 571 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 APPBP2Q92624 585 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 ZBTB3Q9H5J0 574 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 SCN11AQ9UI33 1791 aa10.02□□□□□ -0.81
VCL-207ENST00000624354 EP400Q96L91 3159 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms