RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TNIP1Q15025 636 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 CLUL1Q15846 466 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 CCDC144CPQ8IYA2 1237 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 ARHGAP24Q8N264 748 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 PTPRKQ15262 1439 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 PHLPP2Q6ZVD8 1323 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 TLDC2A0PJX2 215 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 SLC5A1P13866 664 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 SAMD1Q6SPF0 538 aaPredicted RBP10.02□□□□□ -0.81
VCL-206ENST00000623461 SECISBP2LQ93073 1101 aaKnown RBP10.02□□□□□ -0.81
VCL-206ENST00000623461 ZRANB1Q9UGI0 708 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 FERP16591 822 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 NEDD9Q14511 834 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 BAIAP2L1Q9UHR4 511 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 TTC21AQ8NDW8 1320 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 MACROD2A1Z1Q3 448 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 IQUBQ8NA54 791 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 IQCDQ96DY2 449 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 LRRC2Q9BYS8 371 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 ACTN4O43707 911 aaKnown RBP10.02□□□□□ -0.81
VCL-206ENST00000623461 CUTAO60888 179 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 IFIT5Q13325 482 aaKnown RBP10.02□□□□□ -0.81
VCL-206ENST00000623461 CCDC174Q6PII3 467 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 C8orf58Q8NAV2 365 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 VCX3BQ9H321 246 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 MKNK2Q9HBH9 465 aa10.02□□□□□ -0.81
VCL-206ENST00000623461 UHRF1BP1Q6BDS2 1440 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 LIG3P49916 1009 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 HAND2P61296 217 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 SND1Q7KZF4 910 aaKnown RBP eCLIP10.01□□□□□ -0.813e-6■■□□□ 14.2
VCL-206ENST00000623461 PNMA8AQ86V59 439 aaPredicted RBP10.01□□□□□ -0.81
VCL-206ENST00000623461 MICAL1Q8TDZ2 1067 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 MTUS1Q9ULD2 1270 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 UTP11Q9Y3A2 253 aaKnown RBP10.01□□□□□ -0.81
VCL-206ENST00000623461 FYB2Q5VWT5 728 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 ICE2Q659A1 982 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 PHLDB2Q86SQ0 1253 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 BCAS4Q8TDM0 211 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 TM6SF1Q9BZW5 370 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 TCOF1Q13428 1488 aaKnown RBP10.01□□□□□ -0.81
VCL-206ENST00000623461 RASSF2P50749 326 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 GRIPAP1Q4V328 841 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 ANO1Q5XXA6 986 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 MCTP2Q6DN12 878 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 MAGEA9P43362 315 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 STX17P56962 302 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 CALCOCO2Q13137 446 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 VWA3BQ502W6 1294 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 OSCARQ8IYS5 282 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 XPO4Q9C0E2 1151 aaKnown RBP10.01□□□□□ -0.81
VCL-206ENST00000623461 TDRD7Q8NHU6 1098 aaKnown RBP10.01□□□□□ -0.81
VCL-206ENST00000623461 KIAA0586Q9BVV6 1533 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 APOBRQ0VD83 1088 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 KCNH5Q8NCM2 988 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 TSNARE1Q96NA8 513 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 PI4KAP2A4QPH2 592 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 RAB11FIP4Q86YS3 637 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 PI4KAP1Q8N8J0 262 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 NOX5Q96PH1 765 aa10.01□□□□□ -0.81
VCL-206ENST00000623461 WWC3Q9ULE0 1092 aa10□□□□□ -0.81
VCL-206ENST00000623461 PPP2R2CQ9Y2T4 447 aa10□□□□□ -0.81
VCL-206ENST00000623461 C14orf93Q9H972 538 aaKnown RBP10□□□□□ -0.81
VCL-206ENST00000623461 MYO5CQ9NQX4 1742 aa10□□□□□ -0.81
VCL-206ENST00000623461 RIPOR2Q9Y4F9 1068 aa10□□□□□ -0.81
VCL-206ENST00000623461 SAR1BQ9Y6B6 198 aa10□□□□□ -0.81
VCL-206ENST00000623461 ZNF202O95125 648 aa10□□□□□ -0.81
VCL-206ENST00000623461 KRT2P35908 639 aa10□□□□□ -0.81
VCL-206ENST00000623461 HNRNPH2P55795 449 aaKnown RBP10□□□□□ -0.81
VCL-206ENST00000623461 LRMPQ12912 555 aa10□□□□□ -0.81
VCL-206ENST00000623461 CFAP221Q4G0U5 840 aa10□□□□□ -0.81
VCL-206ENST00000623461 ZNF444Q8N0Y2 327 aaPredicted RBP10□□□□□ -0.81
VCL-206ENST00000623461 DDX41Q9UJV9 622 aaKnown RBP10□□□□□ -0.81
VCL-206ENST00000623461 ANAPC4Q9UJX5 808 aa10□□□□□ -0.81
VCL-206ENST00000623461 ADGRF5Q8IZF2 1346 aa10□□□□□ -0.81
VCL-206ENST00000623461 SLFNL1Q499Z3 407 aa10□□□□□ -0.81
VCL-206ENST00000623461 PPP1R12CQ9BZL4 782 aa10□□□□□ -0.81
VCL-206ENST00000623461 SPINK5Q9NQ38 1064 aaPredicted RBP10□□□□□ -0.81
VCL-206ENST00000623461 NME9Q86XW9 330 aa10□□□□□ -0.81
VCL-206ENST00000623461 GBP5Q96PP8 586 aa10□□□□□ -0.81
VCL-206ENST00000623461 SYNRGQ9UMZ2 1314 aa10□□□□□ -0.81
VCL-206ENST00000623461 SGSM2O43147 1006 aa10□□□□□ -0.81
VCL-206ENST00000623461 UQCRFS1P1P0C7P4 283 aa10□□□□□ -0.81
VCL-206ENST00000623461 ASIC1P78348 528 aa10□□□□□ -0.81
VCL-206ENST00000623461 CAVIN4Q5BKX8 364 aa10□□□□□ -0.81
VCL-206ENST00000623461 ZNF365Q70YC5 407 aa10□□□□□ -0.81
VCL-206ENST00000623461 SPTLC3Q9NUV7 552 aa10□□□□□ -0.81
VCL-206ENST00000623461 KCNH3Q9ULD8 1083 aa10□□□□□ -0.81
VCL-206ENST00000623461 ARHGEF11O15085 1522 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 CALM1P0DP23 149 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 CALM2P0DP24 149 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 CALM3P0DP25 149 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 MTX1Q13505 466 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 PPP1R13BQ96KQ4 1090 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 PDE11AQ9HCR9 933 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 USH1CQ9Y6N9 552 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 ZFYVE9O95405 1425 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 SLC27A2O14975 620 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 CALML3P27482 149 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 MAP7Q14244 749 aa9.99□□□□□ -0.81
VCL-206ENST00000623461 FBXO18Q8NFZ0 1043 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms