RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 METTL24Q5JXM2 366 aa29.93■■■□□ 2.38
CPSF1-214ENST00000622776 TEPSINQ96N21 525 aa29.93■■■□□ 2.38
CPSF1-214ENST00000622776 LAMB1P07942 1786 aa29.92■■■□□ 2.38
CPSF1-214ENST00000622776 TCP10L2B9ZVM9 353 aa29.92■■■□□ 2.38
CPSF1-214ENST00000622776 OTOP1Q7RTM1 612 aa29.92■■■□□ 2.38
CPSF1-214ENST00000622776 CDAN1Q8IWY9 1227 aa29.92■■■□□ 2.38
CPSF1-214ENST00000622776 ELP3Q9H9T3 547 aa29.92■■■□□ 2.38
CPSF1-214ENST00000622776 TESPA1A2RU30 521 aaPredicted RBP29.91■■■□□ 2.38
CPSF1-214ENST00000622776 CHAF1AQ13111 956 aaPredicted RBP29.91■■■□□ 2.38
CPSF1-214ENST00000622776 CAVIN4Q5BKX8 364 aa29.91■■■□□ 2.38
CPSF1-214ENST00000622776 PTPN18Q99952 460 aa29.91■■■□□ 2.38
CPSF1-214ENST00000622776 KIAA0100Q14667 2235 aaKnown RBP29.9■■■□□ 2.38
CPSF1-214ENST00000622776 FRAT2O75474 233 aaPredicted RBP29.9■■■□□ 2.38
CPSF1-214ENST00000622776 TNNI2P48788 182 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 CRHR2Q13324 411 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 PRPF38BQ5VTL8 546 aaKnown RBP29.9■■■□□ 2.38
CPSF1-214ENST00000622776 VGLL2Q8N8G2 317 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 TBC1D22AQ8WUA7 517 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 OPTNQ96CV9 577 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 TMEM39BQ9GZU3 492 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 PTPRCP08575 1304 aa29.9■■■□□ 2.38
CPSF1-214ENST00000622776 ARAP2Q8WZ64 1704 aa29.89■■■□□ 2.38
CPSF1-214ENST00000622776 PDE8BO95263 885 aa29.89■■■□□ 2.38
CPSF1-214ENST00000622776 HDLBPQ00341 1268 aaKnown RBP29.89■■■□□ 2.38
CPSF1-214ENST00000622776 PPP1R3FQ6ZSY5 799 aaPredicted RBP29.89■■■□□ 2.38
CPSF1-214ENST00000622776 ERO1AQ96HE7 468 aa29.89■■■□□ 2.38
CPSF1-214ENST00000622776 OTOFQ9HC10 1997 aa29.87■■■□□ 2.37
CPSF1-214ENST00000622776 MAP3K9P80192 1104 aa29.87■■■□□ 2.37
CPSF1-214ENST00000622776 KLHDC4Q8TBB5 520 aa29.87■■■□□ 2.37
CPSF1-214ENST00000622776 MS4A4AQ96JQ5 239 aa29.87■■■□□ 2.37
CPSF1-214ENST00000622776 BCAMP50895 628 aa29.86■■■□□ 2.37
CPSF1-214ENST00000622776 CD99L2Q8TCZ2 262 aa29.86■■■□□ 2.37
CPSF1-214ENST00000622776 SSH1Q8WYL5 1049 aa29.86■■■□□ 2.37
CPSF1-214ENST00000622776 TEKT1Q969V4 418 aa29.86■■■□□ 2.37
CPSF1-214ENST00000622776 USP44Q9H0E7 712 aa29.86■■■□□ 2.37
CPSF1-214ENST00000622776 HTTP42858 3142 aa29.86■■■□□ 2.37
CPSF1-214ENST00000622776 VGLL4Q14135 290 aa29.85■■■□□ 2.37
CPSF1-214ENST00000622776 CNKSR2Q8WXI2 1034 aa29.85■■■□□ 2.37
CPSF1-214ENST00000622776 DDX55Q8NHQ9 600 aaKnown RBP eCLIP29.84■■■□□ 2.37
CPSF1-214ENST00000622776 MRIQ9BWK5 157 aa29.84■■■□□ 2.37
CPSF1-214ENST00000622776 PTPN22Q9Y2R2 807 aa29.84■■■□□ 2.37
CPSF1-214ENST00000622776 E9PSI1 815 aa29.83■■■□□ 2.37
CPSF1-214ENST00000622776 CACNB3P54284 484 aa29.83■■■□□ 2.37
CPSF1-214ENST00000622776 SP3Q02447 781 aa29.83■■■□□ 2.37
CPSF1-214ENST00000622776 BRI3BPQ8WY22 251 aa29.83■■■□□ 2.37
CPSF1-214ENST00000622776 CSADQ9Y600 493 aa29.83■■■□□ 2.37
CPSF1-214ENST00000622776 IFIT1P09914 478 aaKnown RBP29.82■■■□□ 2.36
CPSF1-214ENST00000622776 FGFR2P21802 821 aa29.82■■■□□ 2.36
CPSF1-214ENST00000622776 GTF2A2P52657 109 aa29.82■■■□□ 2.36
CPSF1-214ENST00000622776 PUM3Q15397 648 aaKnown RBP29.82■■■□□ 2.36
CPSF1-214ENST00000622776 INTS3Q68E01 1043 aaKnown RBP29.82■■■□□ 2.36
CPSF1-214ENST00000622776 ZDHHC15Q96MV8 337 aa29.82■■■□□ 2.36
CPSF1-214ENST00000622776 EFCC1Q9HA90 598 aa29.82■■■□□ 2.36
CPSF1-214ENST00000622776 SUGT1Q9Y2Z0 365 aa29.82■■■□□ 2.36
CPSF1-214ENST00000622776 KIF16BQ96L93 1317 aa29.81■■■□□ 2.36
CPSF1-214ENST00000622776 CCL15-CCL14A0A0B4J2E2 113 aa29.81■■■□□ 2.36
CPSF1-214ENST00000622776 CCL15Q16663 113 aa29.81■■■□□ 2.36
CPSF1-214ENST00000622776 TMOD2Q9NZR1 351 aa29.81■■■□□ 2.36
CPSF1-214ENST00000622776 APOBEC3HQ6NTF7 200 aaKnown RBP29.8■■■□□ 2.36
CPSF1-214ENST00000622776 OTUD5Q96G74 571 aa29.8■■■□□ 2.36
CPSF1-214ENST00000622776 MAST3O60307 1309 aa29.79■■■□□ 2.36
CPSF1-214ENST00000622776 CAP1Q01518 475 aa29.79■■■□□ 2.36
CPSF1-214ENST00000622776 FKBP1CQ5VVH2 108 aa29.79■■■□□ 2.36
CPSF1-214ENST00000622776 FAM83AQ86UY5 434 aa29.79■■■□□ 2.36
CPSF1-214ENST00000622776 EYA2O00167 538 aa29.78■■■□□ 2.36
CPSF1-214ENST00000622776 RFX5P48382 616 aaPredicted RBP29.78■■■□□ 2.36
CPSF1-214ENST00000622776 TAF1CQ15572 869 aaPredicted RBP29.78■■■□□ 2.36
CPSF1-214ENST00000622776 ZFYVE28Q9HCC9 887 aa29.78■■■□□ 2.36
CPSF1-214ENST00000622776 POTEFA5A3E0 1075 aa29.77■■■□□ 2.36
CPSF1-214ENST00000622776 SPDYE5A6NIY4 337 aa29.77■■■□□ 2.36
CPSF1-214ENST00000622776 SLFN5Q08AF3 891 aa29.77■■■□□ 2.36
CPSF1-214ENST00000622776 HHIPL2Q6UWX4 724 aa29.77■■■□□ 2.36
CPSF1-214ENST00000622776 SLC5A1P13866 664 aa29.76■■■□□ 2.35
CPSF1-214ENST00000622776 FAM43AQ8N2R8 423 aa29.76■■■□□ 2.35
CPSF1-214ENST00000622776 ARMC5Q96C12 935 aa29.76■■■□□ 2.35
CPSF1-214ENST00000622776 HOOK2Q96ED9 719 aa29.76■■■□□ 2.35
CPSF1-214ENST00000622776 SNCAIPQ9Y6H5 919 aa29.76■■■□□ 2.35
CPSF1-214ENST00000622776 ALDH1L2Q3SY69 923 aa29.75■■■□□ 2.35
CPSF1-214ENST00000622776 ERO1BQ86YB8 467 aa29.75■■■□□ 2.35
CPSF1-214ENST00000622776 WDR66Q8TBY9 1149 aa29.75■■■□□ 2.35
CPSF1-214ENST00000622776 LPIN2Q92539 896 aa29.75■■■□□ 2.35
CPSF1-214ENST00000622776 WRNIP1Q96S55 665 aa29.75■■■□□ 2.35
CPSF1-214ENST00000622776 CENPFP49454 3210 aa29.73■■■□□ 2.35
CPSF1-214ENST00000622776 ARHGEF6Q15052 776 aa29.73■■■□□ 2.35
CPSF1-214ENST00000622776 ATG9AQ7Z3C6 839 aa29.73■■■□□ 2.35
CPSF1-214ENST00000622776 ZKSCAN4Q969J2 545 aaPredicted RBP29.73■■■□□ 2.35
CPSF1-214ENST00000622776 CETPP11597 493 aa29.72■■■□□ 2.35
CPSF1-214ENST00000622776 DCAF15Q66K64 600 aa29.72■■■□□ 2.35
CPSF1-214ENST00000622776 SMC4Q9NTJ3 1288 aa29.72■■■□□ 2.35
CPSF1-214ENST00000622776 CDCA7LQ96GN5 454 aa29.71■■■□□ 2.35
CPSF1-214ENST00000622776 PCDH10Q9P2E7 1040 aa29.71■■■□□ 2.35
CPSF1-214ENST00000622776 RPAP1Q9BWH6 1393 aaPredicted RBP29.71■■■□□ 2.35
CPSF1-214ENST00000622776 IRF6O14896 467 aa29.7■■■□□ 2.35
CPSF1-214ENST00000622776 WDHD1O75717 1129 aaPredicted RBP29.7■■■□□ 2.35
CPSF1-214ENST00000622776 MKI67P46013 3256 aaKnown RBP29.7■■■□□ 2.34
CPSF1-214ENST00000622776 PPIL2Q13356 520 aa29.69■■■□□ 2.34
CPSF1-214ENST00000622776 SNAPC2Q13487 334 aa29.69■■■□□ 2.34
CPSF1-214ENST00000622776 MIGA2Q7L4E1 593 aa29.69■■■□□ 2.34
CPSF1-214ENST00000622776 ZNF341Q9BYN7 854 aa29.69■■■□□ 2.34
CPSF1-214ENST00000622776 ZCCHC17Q9NP64 241 aaKnown RBP29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms