RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 SUDS3Q9H7L9 328 aaPredicted RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 ANO2Q9NQ90 1003 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 FAM208AQ9UK61 1670 aaKnown RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 TATP17735 454 aaPredicted RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 ETF1P62495 437 aaKnown RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 PDCD2Q16342 344 aaPredicted RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 TRIM74Q86UV6 250 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 TRIM73Q86UV7 250 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 MICAL1Q8TDZ2 1067 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 PARD6BQ9BYG5 372 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 IL25Q9H293 177 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 BICC1Q9H694 974 aaKnown RBP11.73□□□□□ -0.53
VPS39-214ENST00000614932 DNAI1Q9UI46 699 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 RGPD5Q99666 1765 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 CCDC151A5D8V7 595 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 IQCA1Q86XH1 822 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 KLHDC4Q8TBB5 520 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 SIL1Q9H173 461 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 BABAM1Q9NWV8 329 aa11.73□□□□□ -0.53
VPS39-214ENST00000614932 CHMLP26374 656 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 ZNF165P49910 485 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 GNL2Q13823 731 aaKnown RBP11.72□□□□□ -0.53
VPS39-214ENST00000614932 BRD3Q15059 726 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 RHPN1Q8TCX5 695 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 SYTL4Q96C24 671 aaPredicted RBP11.72□□□□□ -0.53
VPS39-214ENST00000614932 USP16Q9Y5T5 823 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 FAM169AQ9Y6X4 670 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 DTNBO60941 627 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 URI1O94763 535 aaPredicted RBP11.72□□□□□ -0.53
VPS39-214ENST00000614932 INPP5BP32019 993 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 GCKP35557 465 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 GSDMDP57764 484 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 WLSQ5T9L3 541 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 CC2D2BQ6DHV5 1058 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 ZNF790Q6PG37 636 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 HOMER1Q86YM7 354 aa11.72□□□□□ -0.53
VPS39-214ENST00000614932 ZNF496Q96IT1 587 aaPredicted RBP11.72□□□□□ -0.53
VPS39-214ENST00000614932 SLC5A9Q2M3M2 681 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 TBC1D25Q3MII6 688 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 HDXQ7Z353 690 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 RIC3Q7Z5B4 369 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 SSH3Q8TE77 659 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 ANAPC4Q9UJX5 808 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 PALD1Q9ULE6 856 aa11.71□□□□□ -0.53
VPS39-214ENST00000614932 PHKG2P15735 406 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 MCM6Q14566 821 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 RPUSD2Q8IZ73 545 aaKnown RBP11.71□□□□□ -0.54
VPS39-214ENST00000614932 FAM71BQ8TC56 605 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 RABGGTAQ92696 567 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 CD248Q9HCU0 757 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 STRN4Q9NRL3 753 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.71□□□□□ -0.54
VPS39-214ENST00000614932 MST1RQ04912 1400 aa11.71□□□□□ -0.54
VPS39-214ENST00000614932 NPHP3Q7Z494 1330 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 CYP27B1O15528 508 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 CCP110O43303 1012 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 PECAM1P16284 738 aaPredicted RBP11.7□□□□□ -0.54
VPS39-214ENST00000614932 KCNJ6P48051 423 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 CAMK4Q16566 473 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 HSP90B2PQ58FF3 399 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 LARP6Q9BRS8 491 aaKnown RBP11.7□□□□□ -0.54
VPS39-214ENST00000614932 TNMDQ9H2S6 317 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 MED1Q15648 1581 aaPredicted RBP11.7□□□□□ -0.54
VPS39-214ENST00000614932 GOLGA6L19H0YKK7 550 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 EBAG9O00559 213 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 PPFIA2O75334 1257 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 CAVIN2O95810 425 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 F13A1P00488 732 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 CLNS1AP54105 237 aaKnown RBP11.7□□□□□ -0.54
VPS39-214ENST00000614932 COPS6Q7L5N1 327 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 CADPS2Q86UW7 1296 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 DRAXINQ8NBI3 349 aaPredicted RBP11.7□□□□□ -0.54
VPS39-214ENST00000614932 XAGE3Q8WTP9 111 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 KIF9Q9HAQ2 790 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 SALL3Q9BXA9 1300 aa11.7□□□□□ -0.54
VPS39-214ENST00000614932 ATP5J2-PTCD1G3V325 749 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 N4BP1O75113 896 aaKnown RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 PTCD1O75127 700 aaKnown RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 KSR2Q6VAB6 950 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 RSRC2Q7L4I2 434 aaKnown RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 CKAP2LQ8IYA6 745 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 DDX54Q8TDD1 881 aaKnown RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 HNRNPLLQ8WVV9 542 aaKnown RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 UPF3BQ9BZI7 483 aaKnown RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 SLC52A2Q9HAB3 445 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 MEGF6O75095 1541 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 FAM163BP0C2L3 166 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 VPS53Q5VIR6 699 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 DNAJC14Q6Y2X3 702 aaPredicted RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 TOM1L2Q6ZVM7 507 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 SUCLG2Q96I99 432 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 MYD88Q99836 296 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 ESYT1Q9BSJ8 1104 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 TMX4Q9H1E5 349 aaPredicted RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 PRDM11Q9NQV5 511 aa11.69□□□□□ -0.54
VPS39-214ENST00000614932 ZNF335Q9H4Z2 1342 aaPredicted RBP11.69□□□□□ -0.54
VPS39-214ENST00000614932 STX6O43752 255 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 PRPHP41219 470 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 PDIA6Q15084 440 aa11.68□□□□□ -0.54
VPS39-214ENST00000614932 TTC5Q8N0Z6 440 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms