RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 USP6P35125 1406 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 CYLC1P35663 651 aaPredicted RBP15.68■□□□□ 0.1
GGA3-220ENST00000613421 ASIC1P78348 528 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 MYL5Q02045 173 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 EAF2Q96CJ1 260 aaPredicted RBP15.68■□□□□ 0.1
GGA3-220ENST00000613421 C6orf50Q9HD87 102 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 ME3Q16798 604 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 DTNBO60941 627 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 CCDC175P0C221 793 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 SSR1P43307 286 aaKnown RBP15.68■□□□□ 0.1
GGA3-220ENST00000613421 RILPL1Q5EBL4 403 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 STAP2Q9UGK3 403 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 DENND2AQ9ULE3 1009 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 PTH1RQ03431 593 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 SEPT7Q16181 437 aaKnown RBP15.68■□□□□ 0.1
GGA3-220ENST00000613421 DSCC1Q9BVC3 393 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 ARMT1Q9H993 441 aa15.68■□□□□ 0.1
GGA3-220ENST00000613421 JAK2O60674 1132 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 EDC3Q96F86 508 aaKnown RBP15.67■□□□□ 0.1
GGA3-220ENST00000613421 NAA15Q9BXJ9 866 aaKnown RBP15.67■□□□□ 0.1
GGA3-220ENST00000613421 SRRTQ9BXP5 876 aaKnown RBP15.67■□□□□ 0.1
GGA3-220ENST00000613421 OSBPL3Q9H4L5 887 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 STX17P56962 302 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 STXBP4Q6ZWJ1 553 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 PHKG2P15735 406 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 CETN1Q12798 172 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 ERMNQ8TAM6 284 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 ROBO2Q9HCK4 1378 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 A0A0D9SFI3 127 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 DEXIO95424 95 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 MCM7P33993 719 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 ZNF622Q969S3 477 aaKnown RBP eCLIP15.67■□□□□ 0.17e-7■■□□□ 12.1
GGA3-220ENST00000613421 NLRP1Q9C000 1473 aa15.67■□□□□ 0.1
GGA3-220ENST00000613421 PICALMQ13492 652 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 RTCBQ9Y3I0 505 aaKnown RBP15.66■□□□□ 0.1
GGA3-220ENST00000613421 RGS12O14924 1447 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 CETN2P41208 172 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 DNAJC10Q8IXB1 793 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 KRT222Q8N1A0 295 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 IQUBQ8NA54 791 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 CBX8Q9HC52 389 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 SHTN1A0MZ66 631 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 F8W031 263 aaPredicted RBP15.66■□□□□ 0.1
GGA3-220ENST00000613421 TBCAO75347 108 aaKnown RBP15.66■□□□□ 0.1
GGA3-220ENST00000613421 LDHBP07195 334 aaKnown RBP15.66■□□□□ 0.1
GGA3-220ENST00000613421 PLCG2P16885 1265 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 OTUD7BQ6GQQ9 843 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 CNKSR2Q8WXI2 1034 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 PKP1Q13835 747 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 GTF3C6Q969F1 213 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 RRP36Q96EU6 259 aaKnown RBP15.66■□□□□ 0.1
GGA3-220ENST00000613421 FEZ1Q99689 392 aa15.66■□□□□ 0.1
GGA3-220ENST00000613421 E7EWF7 191 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 ZAP70P43403 619 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 LPIN2Q92539 896 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 DDX17Q92841 729 aaKnown RBP15.65■□□□□ 0.1
GGA3-220ENST00000613421 CTAGE15A4D2H0 777 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 CTAGE8P0CG41 777 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 CTAGE6Q86UF2 777 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 CTAGE4Q8IX94 777 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 ZSWIM6Q9HCJ5 1215 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 TMCO5BA8MYB1 307 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 ERVV-2B6SEH9 535 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 CKAP4Q07065 602 aaKnown RBP15.65■□□□□ 0.1
GGA3-220ENST00000613421 PRR36Q9H6K5 1346 aa15.65■□□□□ 0.1
GGA3-220ENST00000613421 MYO1BO43795 1136 aa15.64■□□□□ 0.1
GGA3-220ENST00000613421 NOP2P46087 812 aaKnown RBP15.64■□□□□ 0.1
GGA3-220ENST00000613421 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.64■□□□□ 0.19e-6■■□□□ 14.3
GGA3-220ENST00000613421 V9GYY5 206 aaPredicted RBP15.64■□□□□ 0.1
GGA3-220ENST00000613421 ARAP3Q8WWN8 1544 aa15.64■□□□□ 0.1
GGA3-220ENST00000613421 ERCC6L2Q5T890 1561 aa15.64■□□□□ 0.1
GGA3-220ENST00000613421 SPHKAPQ2M3C7 1700 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 C8orf37Q96NL8 207 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 CDCA7Q9BWT1 371 aaPredicted RBP15.64■□□□□ 0.09
GGA3-220ENST00000613421 NSFL1CQ9UNZ2 370 aaKnown RBP15.64■□□□□ 0.09
GGA3-220ENST00000613421 DTHD1Q6ZMT9 781 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 KCNH3Q9ULD8 1083 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 ZNF75DP51815 510 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 GOLGA6L7A0A1B0GV03 622 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 TOM1O60784 492 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 LIG1P18858 919 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 GNA11P29992 359 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 ARFGAP3Q9NP61 516 aa15.64■□□□□ 0.09
GGA3-220ENST00000613421 PPP4R3AQ6IN85 833 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 JAG2Q9Y219 1238 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 PTCH1Q13635 1447 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 VWA3AA6NCI4 1184 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 TCIRG1Q13488 830 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 HLTFQ14527 1009 aaKnown RBP eCLIP15.63■□□□□ 0.093e-6■■□□□ 13
GGA3-220ENST00000613421 SYT10Q6XYQ8 523 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 SIRT2Q8IXJ6 389 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 DIS3L2Q8IYB7 885 aaKnown RBP15.63■□□□□ 0.09
GGA3-220ENST00000613421 ZNF174Q15697 407 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 CTR9Q6PD62 1173 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 SYCP3Q8IZU3 236 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 BICDL2A1A5D9 508 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 CUTAO60888 179 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 IFFO1Q0D2I5 559 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 KRT79Q5XKE5 535 aa15.63■□□□□ 0.09
GGA3-220ENST00000613421 SPAG5Q96R06 1193 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms