RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 DBNDD2Q9BQY9 259 aa20.72■□□□□ 0.91
TRIM28-215ENST00000601150 MRIQ9BWK5 157 aa20.72■□□□□ 0.91
TRIM28-215ENST00000601150 MKRN1Q9UHC7 482 aaKnown RBP20.72■□□□□ 0.91
TRIM28-215ENST00000601150 CNTNAP1P78357 1384 aa20.72■□□□□ 0.91
TRIM28-215ENST00000601150 LDHBP07195 334 aaKnown RBP20.71■□□□□ 0.91
TRIM28-215ENST00000601150 ARID4AP29374 1257 aaPredicted RBP20.71■□□□□ 0.91
TRIM28-215ENST00000601150 ZGPATQ8N5A5 531 aaKnown RBP20.71■□□□□ 0.91
TRIM28-215ENST00000601150 SCAF8Q9UPN6 1271 aaKnown RBP20.71■□□□□ 0.91
TRIM28-215ENST00000601150 AKAP11Q9UKA4 1901 aa20.7■□□□□ 0.91
TRIM28-215ENST00000601150 CLRN2A0PK11 232 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 RAB11FIP3O75154 756 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 CCDC158Q5M9N0 1113 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 RHPN1Q8TCX5 695 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 EAF2Q96CJ1 260 aaPredicted RBP20.7■□□□□ 0.9
TRIM28-215ENST00000601150 KIF1BPQ96EK5 621 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 HMG20BQ9P0W2 317 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 TLL2Q9Y6L7 1015 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 MYH2Q9UKX2 1941 aa20.7■□□□□ 0.9
TRIM28-215ENST00000601150 RASSF10A6NK89 507 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 PRDX5P30044 214 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 DEFB115Q30KQ5 88 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 TTC39AQ5SRH9 613 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 HHIPL2Q6UWX4 724 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 SPATA5Q8NB90 893 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 ZDHHC15Q96MV8 337 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 CRBNQ96SW2 442 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 CCDC8Q9H0W5 538 aaPredicted RBP20.69■□□□□ 0.9
TRIM28-215ENST00000601150 DBNLQ9UJU6 430 aaKnown RBP20.69■□□□□ 0.9
TRIM28-215ENST00000601150 AOX1Q06278 1338 aa20.69■□□□□ 0.9
TRIM28-215ENST00000601150 APBB1O00213 710 aa20.68■□□□□ 0.9
TRIM28-215ENST00000601150 SPDYE2Q495Y8 402 aa20.68■□□□□ 0.9
TRIM28-215ENST00000601150 SPTY2D1Q68D10 685 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-215ENST00000601150 C2orf69Q8N8R5 385 aa20.68■□□□□ 0.9
TRIM28-215ENST00000601150 TDRD3Q9H7E2 651 aaKnown RBP20.68■□□□□ 0.9
TRIM28-215ENST00000601150 VEZTQ9HBM0 779 aa20.68■□□□□ 0.9
TRIM28-215ENST00000601150 GBA2Q9HCG7 927 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-215ENST00000601150 IL1RAPL2Q9NP60 686 aa20.68■□□□□ 0.9
TRIM28-215ENST00000601150 ZNF70Q9UC06 446 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-215ENST00000601150 ABCF2Q9UG63 623 aa20.68■□□□□ 0.9
TRIM28-215ENST00000601150 PAPPA2Q9BXP8 1791 aa20.67■□□□□ 0.9
TRIM28-215ENST00000601150 MCAMP43121 646 aa20.67■□□□□ 0.9
TRIM28-215ENST00000601150 SAPCD2Q86UD0 394 aa20.67■□□□□ 0.9
TRIM28-215ENST00000601150 AACSQ86V21 672 aa20.67■□□□□ 0.9
TRIM28-215ENST00000601150 ZNF512BQ96KM6 892 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-215ENST00000601150 DEFB129Q9H1M3 183 aa20.67■□□□□ 0.9
TRIM28-215ENST00000601150 TLR7Q9NYK1 1049 aaKnown RBP20.67■□□□□ 0.9
TRIM28-215ENST00000601150 PPP2R3BQ9Y5P8 575 aa20.67■□□□□ 0.9
TRIM28-215ENST00000601150 PRAMEF18Q5VWM3 479 aa20.66■□□□□ 0.9
TRIM28-215ENST00000601150 PI16Q6UXB8 463 aa20.66■□□□□ 0.9
TRIM28-215ENST00000601150 CLASRPQ8N2M8 674 aaKnown RBP20.66■□□□□ 0.9
TRIM28-215ENST00000601150 JMYQ8N9B5 988 aa20.66■□□□□ 0.9
TRIM28-215ENST00000601150 NF2P35240 595 aa20.65■□□□□ 0.9
TRIM28-215ENST00000601150 TNFAIP1Q13829 316 aa20.65■□□□□ 0.9
TRIM28-215ENST00000601150 DIXDC1Q155Q3 683 aa20.65■□□□□ 0.9
TRIM28-215ENST00000601150 APOBEC3HQ6NTF7 200 aaKnown RBP20.65■□□□□ 0.9
TRIM28-215ENST00000601150 DZIP1Q86YF9 867 aaKnown RBP20.65■□□□□ 0.9
TRIM28-215ENST00000601150 HHIPL1Q96JK4 782 aa20.65■□□□□ 0.9
TRIM28-215ENST00000601150 MAST2Q6P0Q8 1798 aa20.64■□□□□ 0.9
TRIM28-215ENST00000601150 VEGFBP49765 207 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 HUNKP57058 714 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 FKBP1BP68106 108 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 ERICH6Q7L0X2 663 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 SLF2Q8IX21 1173 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 DAGLAQ9Y4D2 1042 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 PCDHB15Q9Y5E8 787 aa20.64■□□□□ 0.89
TRIM28-215ENST00000601150 MYO5AQ9Y4I1 1855 aaKnown RBP20.64■□□□□ 0.89
TRIM28-215ENST00000601150 ECE1P42892 770 aa20.63■□□□□ 0.89
TRIM28-215ENST00000601150 RASA3Q14644 834 aa20.63■□□□□ 0.89
TRIM28-215ENST00000601150 PAXIP1Q6ZW49 1069 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-215ENST00000601150 SNRKQ9NRH2 765 aa20.63■□□□□ 0.89
TRIM28-215ENST00000601150 TMOD2Q9NZR1 351 aa20.63■□□□□ 0.89
TRIM28-215ENST00000601150 SUPT16HQ9Y5B9 1047 aaKnown RBP20.63■□□□□ 0.89
TRIM28-215ENST00000601150 IFIT2P09913 472 aaKnown RBP20.62■□□□□ 0.89
TRIM28-215ENST00000601150 TNNI2P48788 182 aa20.62■□□□□ 0.89
TRIM28-215ENST00000601150 TBC1D9Q6ZT07 1266 aa20.62■□□□□ 0.89
TRIM28-215ENST00000601150 CAPNS2Q96L46 248 aa20.62■□□□□ 0.89
TRIM28-215ENST00000601150 LRRCC1Q9C099 1032 aa20.62■□□□□ 0.89
TRIM28-215ENST00000601150 DCTPP1Q9H773 170 aa20.62■□□□□ 0.89
TRIM28-215ENST00000601150 THSD7BQ9C0I4 1608 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 WDR33Q9C0J8 1336 aaKnown RBP20.61■□□□□ 0.89
TRIM28-215ENST00000601150 TCP10L2B9ZVM9 353 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 MECOMQ03112 1051 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 AAMPQ13685 434 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 FKBP1CQ5VVH2 108 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 CYP4F22Q6NT55 531 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 LRP2BPQ9P2M1 347 aa20.61■□□□□ 0.89
TRIM28-215ENST00000601150 GAKO14976 1311 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 ZAP70P43403 619 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 CACNB3P54284 484 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 GSTO1P78417 241 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 TTLL12Q14166 644 aaPredicted RBP20.6■□□□□ 0.89
TRIM28-215ENST00000601150 SUPT20HL1Q3ZLR7 823 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 FAM163AQ96GL9 167 aaPredicted RBP20.6■□□□□ 0.89
TRIM28-215ENST00000601150 BCL11AQ9H165 835 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 RAI14Q9P0K7 980 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 DOCK2Q92608 1830 aa20.6■□□□□ 0.89
TRIM28-215ENST00000601150 MROH7-TTC4A0A0A0MT08 1334 aa20.59■□□□□ 0.89
TRIM28-215ENST00000601150 CYP2E1P05181 493 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-215ENST00000601150 GRM1Q13255 1194 aa20.59■□□□□ 0.89
TRIM28-215ENST00000601150 RGMBQ6NW40 437 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms