RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 PKN2Q16513 984 aaKnown RBP21.29■■□□□ 1
SCAF1-204ENST00000601038 WNK4Q96J92 1243 aa21.29■■□□□ 1
SCAF1-204ENST00000601038 KIF16BQ96L93 1317 aa21.29■■□□□ 1
SCAF1-204ENST00000601038 EYA2O00167 538 aa21.28■■□□□ 1
SCAF1-204ENST00000601038 IFIT1P09914 478 aaKnown RBP21.28■■□□□ 1
SCAF1-204ENST00000601038 FGFR2P21802 821 aa21.28■■□□□ 1
SCAF1-204ENST00000601038 RFX5P48382 616 aaPredicted RBP21.28■■□□□ 1
SCAF1-204ENST00000601038 BCAMP50895 628 aa21.28■■□□□ 1
SCAF1-204ENST00000601038 CHAF1AQ13111 956 aaPredicted RBP21.28■■□□□ 1
SCAF1-204ENST00000601038 PUM3Q15397 648 aaKnown RBP21.28■■□□□ 1
SCAF1-204ENST00000601038 GRIK5Q16478 980 aa21.28■■□□□ 1
SCAF1-204ENST00000601038 IFNL1Q8IU54 200 aa21.27■■□□□ 1
SCAF1-204ENST00000601038 ANKRD13AQ8IZ07 590 aa21.27■■□□□ 1
SCAF1-204ENST00000601038 MRIQ9BWK5 157 aa21.27■■□□□ 1
SCAF1-204ENST00000601038 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.27■■□□□ 1
SCAF1-204ENST00000601038 ARAP2Q8WZ64 1704 aa21.26■□□□□ 0.99
SCAF1-204ENST00000601038 TNNI2P48788 182 aa21.26■□□□□ 0.99
SCAF1-204ENST00000601038 TEPSINQ96N21 525 aa21.26■□□□□ 0.99
SCAF1-204ENST00000601038 R3HDMLQ9H3Y0 253 aa21.26■□□□□ 0.99
SCAF1-204ENST00000601038 TCP10L2B9ZVM9 353 aa21.25■□□□□ 0.99
SCAF1-204ENST00000601038 CCER2I3L3R5 266 aa21.25■□□□□ 0.99
SCAF1-204ENST00000601038 FKTNO75072 461 aa21.25■□□□□ 0.99
SCAF1-204ENST00000601038 UBTFL1P0CB47 393 aaPredicted RBP21.25■□□□□ 0.99
SCAF1-204ENST00000601038 TEKT1Q969V4 418 aa21.25■□□□□ 0.99
SCAF1-204ENST00000601038 NOB1Q9ULX3 412 aaKnown RBP21.25■□□□□ 0.99
SCAF1-204ENST00000601038 SUGT1Q9Y2Z0 365 aa21.25■□□□□ 0.99
SCAF1-204ENST00000601038 SLC5A1P13866 664 aa21.24■□□□□ 0.99
SCAF1-204ENST00000601038 LPIN2Q92539 896 aa21.24■□□□□ 0.99
SCAF1-204ENST00000601038 FBXO3Q9UK99 471 aa21.24■□□□□ 0.99
SCAF1-204ENST00000601038 ATG9AQ7Z3C6 839 aa21.23■□□□□ 0.99
SCAF1-204ENST00000601038 ZDHHC15Q96MV8 337 aa21.23■□□□□ 0.99
SCAF1-204ENST00000601038 API5Q9BZZ5 524 aaKnown RBP21.23■□□□□ 0.99
SCAF1-204ENST00000601038 TMEM39BQ9GZU3 492 aa21.23■□□□□ 0.99
SCAF1-204ENST00000601038 HPS5Q9UPZ3 1129 aa21.23■□□□□ 0.99
SCAF1-204ENST00000601038 HDAC5Q9UQL6 1122 aa21.23■□□□□ 0.99
SCAF1-204ENST00000601038 MAST3O60307 1309 aa21.23■□□□□ 0.99
SCAF1-204ENST00000601038 IGF2BP3O00425 579 aaKnown RBP eCLIP21.22■□□□□ 0.99
SCAF1-204ENST00000601038 GJA5P36382 358 aa21.22■□□□□ 0.99
SCAF1-204ENST00000601038 OTUD7BQ6GQQ9 843 aa21.22■□□□□ 0.99
SCAF1-204ENST00000601038 CDAN1Q8IWY9 1227 aa21.22■□□□□ 0.99
SCAF1-204ENST00000601038 CIAO1O76071 339 aa21.21■□□□□ 0.99
SCAF1-204ENST00000601038 SOX10P56693 466 aa21.21■□□□□ 0.99
SCAF1-204ENST00000601038 HHIPL2Q6UWX4 724 aa21.21■□□□□ 0.99
SCAF1-204ENST00000601038 WDR66Q8TBY9 1149 aa21.21■□□□□ 0.99
SCAF1-204ENST00000601038 LAMB1P07942 1786 aa21.2■□□□□ 0.99
SCAF1-204ENST00000601038 TESPA1A2RU30 521 aaPredicted RBP21.2■□□□□ 0.98
SCAF1-204ENST00000601038 MAP3K9P80192 1104 aa21.2■□□□□ 0.98
SCAF1-204ENST00000601038 FKBP1CQ5VVH2 108 aa21.2■□□□□ 0.98
SCAF1-204ENST00000601038 APOBEC3HQ6NTF7 200 aaKnown RBP21.2■□□□□ 0.98
SCAF1-204ENST00000601038 FBXO46Q6PJ61 603 aaPredicted RBP21.2■□□□□ 0.98
SCAF1-204ENST00000601038 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.2■□□□□ 0.98
SCAF1-204ENST00000601038 OPTNQ96CV9 577 aa21.2■□□□□ 0.98
SCAF1-204ENST00000601038 ELP3Q9H9T3 547 aa21.2■□□□□ 0.98
SCAF1-204ENST00000601038 TMOD2Q9NZR1 351 aa21.2■□□□□ 0.98
SCAF1-204ENST00000601038 CEP126Q9P2H0 1117 aa21.2■□□□□ 0.98
SCAF1-204ENST00000601038 RARSP54136 660 aaKnown RBP21.19■□□□□ 0.98
SCAF1-204ENST00000601038 CACNB3P54284 484 aa21.19■□□□□ 0.98
SCAF1-204ENST00000601038 FAM83AQ86UY5 434 aa21.19■□□□□ 0.98
SCAF1-204ENST00000601038 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.19■□□□□ 0.98
SCAF1-204ENST00000601038 SIL1Q9H173 461 aa21.19■□□□□ 0.98
SCAF1-204ENST00000601038 ARHGAP45Q92619 1136 aa21.18■□□□□ 0.98
SCAF1-204ENST00000601038 PTPN18Q99952 460 aa21.18■□□□□ 0.98
SCAF1-204ENST00000601038 LRRFIP2Q9Y608 721 aaKnown RBP21.18■□□□□ 0.98
SCAF1-204ENST00000601038 IL15P40933 162 aaPredicted RBP21.17■□□□□ 0.98
SCAF1-204ENST00000601038 VGLL4Q14135 290 aa21.17■□□□□ 0.98
SCAF1-204ENST00000601038 ATP2B3Q16720 1220 aa21.17■□□□□ 0.98
SCAF1-204ENST00000601038 HOOK2Q96ED9 719 aa21.17■□□□□ 0.98
SCAF1-204ENST00000601038 MS4A4AQ96JQ5 239 aa21.17■□□□□ 0.98
SCAF1-204ENST00000601038 GNL3LQ9NVN8 582 aaKnown RBP21.17■□□□□ 0.98
SCAF1-204ENST00000601038 CSADQ9Y600 493 aa21.17■□□□□ 0.98
SCAF1-204ENST00000601038 OTOFQ9HC10 1997 aa21.17■□□□□ 0.98
SCAF1-204ENST00000601038 CRHR2Q13324 411 aa21.16■□□□□ 0.98
SCAF1-204ENST00000601038 MEIS3Q99687 375 aa21.16■□□□□ 0.98
SCAF1-204ENST00000601038 COPRSQ9NQ92 184 aa21.16■□□□□ 0.98
SCAF1-204ENST00000601038 INTS3Q68E01 1043 aaKnown RBP21.15■□□□□ 0.98
SCAF1-204ENST00000601038 CNKSR2Q8WXI2 1034 aa21.15■□□□□ 0.98
SCAF1-204ENST00000601038 GTF2A2P52657 109 aa21.14■□□□□ 0.97
SCAF1-204ENST00000601038 PA2G4Q9UQ80 394 aaKnown RBP21.14■□□□□ 0.97
SCAF1-204ENST00000601038 TRIM17Q9Y577 477 aa21.14■□□□□ 0.97
SCAF1-204ENST00000601038 SEMA3EO15041 775 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 ZBTB22O15209 634 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 GNAI3P08754 354 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 OTOP1Q7RTM1 612 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 BRI3BPQ8WY22 251 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 ERO1AQ96HE7 468 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 DENND2AQ9ULE3 1009 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 DAGLAQ9Y4D2 1042 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 MYH13Q9UKX3 1938 aa21.13■□□□□ 0.97
SCAF1-204ENST00000601038 RPAP1Q9BWH6 1393 aaPredicted RBP21.12■□□□□ 0.97
SCAF1-204ENST00000601038 SALL1Q9NSC2 1324 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 SPDYE5A6NIY4 337 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 LDHBP07195 334 aaKnown RBP21.12■□□□□ 0.97
SCAF1-204ENST00000601038 PRDX5P30044 214 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 PHKA1P46020 1223 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 DCAF15Q66K64 600 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 OTUD5Q96G74 571 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 WRNIP1Q96S55 665 aa21.12■□□□□ 0.97
SCAF1-204ENST00000601038 CCL15-CCL14A0A0B4J2E2 113 aa21.11■□□□□ 0.97
SCAF1-204ENST00000601038 IPO8O15397 1037 aaKnown RBP21.11■□□□□ 0.97
SCAF1-204ENST00000601038 SP3Q02447 781 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms