RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 RNF113AO15541 343 aaKnown RBP17.35■□□□□ 0.37
UPF1-211ENST00000600868 PDE6AP16499 860 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 ADD2P35612 726 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 MMP14P50281 582 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 MECOMQ03112 1051 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 SLC9C2Q5TAH2 1124 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 DZIP1Q86YF9 867 aaKnown RBP17.35■□□□□ 0.37
UPF1-211ENST00000600868 GPC2Q8N158 579 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 NSUN4Q96CB9 384 aaKnown RBP17.35■□□□□ 0.37
UPF1-211ENST00000600868 MRIQ9BWK5 157 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 MAST3O60307 1309 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 MAST2Q6P0Q8 1798 aa17.35■□□□□ 0.37
UPF1-211ENST00000600868 GSTO1P78417 241 aa17.34■□□□□ 0.37
UPF1-211ENST00000600868 HDLBPQ00341 1268 aaKnown RBP17.34■□□□□ 0.37
UPF1-211ENST00000600868 UBE3CQ15386 1083 aa17.34■□□□□ 0.37
UPF1-211ENST00000600868 NAA16Q6N069 864 aaPredicted RBP17.34■□□□□ 0.37
UPF1-211ENST00000600868 MAGEB6Q8N7X4 407 aa17.34■□□□□ 0.37
UPF1-211ENST00000600868 ZNF384Q8TF68 577 aa17.34■□□□□ 0.37
UPF1-211ENST00000600868 DPF2Q92785 391 aa17.34■□□□□ 0.37
UPF1-211ENST00000600868 TTF2Q9UNY4 1162 aaKnown RBP17.34■□□□□ 0.37
UPF1-211ENST00000600868 TCRBV5S4A2TA0A5A2 114 aa17.33■□□□□ 0.36
UPF1-211ENST00000600868 CDC45O75419 566 aa17.33■□□□□ 0.36
UPF1-211ENST00000600868 CHMLP26374 656 aa17.33■□□□□ 0.36
UPF1-211ENST00000600868 KIAA0825Q8IV33 1275 aa17.33■□□□□ 0.36
UPF1-211ENST00000600868 SLF2Q8IX21 1173 aa17.33■□□□□ 0.36
UPF1-211ENST00000600868 FAM163AQ96GL9 167 aaPredicted RBP17.33■□□□□ 0.36
UPF1-211ENST00000600868 ZBTB12Q9Y330 459 aaPredicted RBP17.33■□□□□ 0.36
UPF1-211ENST00000600868 GJA3Q9Y6H8 435 aa17.33■□□□□ 0.36
UPF1-211ENST00000600868 ZNF532Q9HCE3 1301 aa17.32■□□□□ 0.36
UPF1-211ENST00000600868 F8W031 263 aaPredicted RBP17.32■□□□□ 0.36
UPF1-211ENST00000600868 LDHCP07864 332 aa17.32■□□□□ 0.36
UPF1-211ENST00000600868 ZMYM1Q5SVZ6 1142 aa17.32■□□□□ 0.36
UPF1-211ENST00000600868 DPY19L2Q6NUT2 758 aa17.32■□□□□ 0.36
UPF1-211ENST00000600868 DIAPH3Q9NSV4 1193 aa17.32■□□□□ 0.36
UPF1-211ENST00000600868 HDAC9Q9UKV0 1011 aa17.32■□□□□ 0.36
UPF1-211ENST00000600868 USP17L8P0C7I0 530 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 CYP7A1P22680 504 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 GMPSP49915 693 aaPredicted RBP17.31■□□□□ 0.36
UPF1-211ENST00000600868 CASC1Q6TDU7 716 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 HHIPL2Q6UWX4 724 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 OGFOD1Q8N543 542 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 APPBP2Q92624 585 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 SERPINA10Q9UK55 444 aa17.31■□□□□ 0.36
UPF1-211ENST00000600868 UTRNP46939 3433 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 MROH7-TTC4A0A0A0MT08 1334 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 GAKO14976 1311 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 MYH2Q9UKX2 1941 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 GLTPD2A6NH11 291 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 CHGBP05060 677 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 ZNF280AP59817 542 aaPredicted RBP17.3■□□□□ 0.36
UPF1-211ENST00000600868 NMIQ13287 307 aaPredicted RBP17.3■□□□□ 0.36
UPF1-211ENST00000600868 DIXDC1Q155Q3 683 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 SLFNL1Q499Z3 407 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 RUFY2Q8WXA3 655 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 TEKT1Q969V4 418 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 HELLSQ9NRZ9 838 aa17.3■□□□□ 0.36
UPF1-211ENST00000600868 A0A0D9SFI3 127 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 DDNO94850 711 aaPredicted RBP17.29■□□□□ 0.36
UPF1-211ENST00000600868 CRKP46108 304 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 SCNN1DP51172 638 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 CWC27Q6UX04 472 aaKnown RBP17.29■□□□□ 0.36
UPF1-211ENST00000600868 ADGRA1Q86SQ6 560 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 OSBP2Q969R2 916 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 L3MBTL3Q96JM7 780 aaPredicted RBP17.29■□□□□ 0.36
UPF1-211ENST00000600868 FAM227BQ96M60 508 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 ZDHHC15Q96MV8 337 aa17.29■□□□□ 0.36
UPF1-211ENST00000600868 GPR75-ASB3A0A0A6YYF3 556 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 PPP4CP60510 307 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 MCMDC2Q4G0Z9 681 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 CERS3Q8IU89 383 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 MTMR14Q8NCE2 650 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 PUS7LQ9H0K6 701 aaKnown RBP17.28■□□□□ 0.36
UPF1-211ENST00000600868 GPRC5DQ9NZD1 345 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 CNOT7Q9UIV1 285 aaKnown RBP17.28■□□□□ 0.36
UPF1-211ENST00000600868 DAGLAQ9Y4D2 1042 aa17.28■□□□□ 0.36
UPF1-211ENST00000600868 RAD50Q92878 1312 aa17.27■□□□□ 0.36
UPF1-211ENST00000600868 BAG3O95817 575 aa17.27■□□□□ 0.36
UPF1-211ENST00000600868 MICALL2Q8IY33 904 aa17.27■□□□□ 0.36
UPF1-211ENST00000600868 SEC62Q99442 399 aaKnown RBP17.27■□□□□ 0.36
UPF1-211ENST00000600868 MAGEB6P1A0A0J9YX57 407 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 H7C1D1 291 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 M0R2C6 588 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 SGSM2O43147 1006 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 CFAP100Q494V2 611 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 APOBEC3HQ6NTF7 200 aaKnown RBP17.26■□□□□ 0.35
UPF1-211ENST00000600868 RIOK1Q9BRS2 568 aaKnown RBP17.26■□□□□ 0.35
UPF1-211ENST00000600868 NOL10Q9BSC4 688 aaKnown RBP17.26■□□□□ 0.35
UPF1-211ENST00000600868 ESYT1Q9BSJ8 1104 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 MYOZ2Q9NPC6 264 aa17.26■□□□□ 0.35
UPF1-211ENST00000600868 SHTN1A0MZ66 631 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 PLCG2P16885 1265 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 LMOD1P29536 600 aaPredicted RBP17.25■□□□□ 0.35
UPF1-211ENST00000600868 BTDP43251 543 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 RBM5P52756 815 aaKnown RBP eCLIP17.25■□□□□ 0.35
UPF1-211ENST00000600868 MFAP1P55081 439 aaKnown RBP17.25■□□□□ 0.35
UPF1-211ENST00000600868 DLGAP5Q15398 846 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 C8orf34Q49A92 452 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 MIGA1Q8NAN2 632 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 AIDAQ96BJ3 306 aa17.25■□□□□ 0.35
UPF1-211ENST00000600868 ZBED3Q96IU2 234 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms