RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CRHR2Q13324 411 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 RASA3Q14644 834 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 CCDC27Q2M243 656 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 BEND3Q5T5X7 828 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 ZNF804AQ7Z570 1209 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 LRCH3Q96II8 777 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 PTPN18Q99952 460 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 ELP3Q9H9T3 547 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 CNNM1Q9NRU3 951 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 BDP1A6H8Y1 2624 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 ZSWIM8A7E2V4 1837 aa11□□□□□ -0.65
SHKBP1-220ENST00000599716 PPP1R12BO60237 982 aaPredicted RBP10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 IL1R1P14778 569 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 DSG3P32926 999 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 TAF7LQ5H9L4 462 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 SLC4A10Q6U841 1118 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 LDHAL6AQ6ZMR3 332 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 MTMR14Q8NCE2 650 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 CHMP4AQ9BY43 222 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 TDRD3Q9H7E2 651 aaKnown RBP10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 NCOR1O75376 2440 aa10.99□□□□□ -0.65
SHKBP1-220ENST00000599716 MANSC4A6NHS7 340 aaPredicted RBP10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 TCP10L2B9ZVM9 353 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 NPM3O75607 178 aaKnown RBP10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 MYCP01106 439 aaPredicted RBP10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 CACNB3P54284 484 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 MAP3K11Q16584 847 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 SUCLG2Q96I99 432 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 ZNF333Q96JL9 665 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 TMEM39BQ9GZU3 492 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 MRS2Q9HD23 443 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 ZNF70Q9UC06 446 aaPredicted RBP10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 TTF2Q9UNY4 1162 aaKnown RBP10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 PTPN22Q9Y2R2 807 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 IL16Q14005 1332 aa10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 COL1A1P02452 1464 aaPredicted RBP10.98□□□□□ -0.65
SHKBP1-220ENST00000599716 CACNA1FO60840 1977 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 GRM8O00222 908 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 MYO1BO43795 1136 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 CHAF1AQ13111 956 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 CCDC57Q2TAC2 916 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 MFSD14BQ5SR56 506 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 C15orf52Q6ZUT6 534 aaKnown RBP10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 DEFB123Q8N688 67 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 OPTNQ96CV9 577 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 KAZALD1Q96I82 304 aa10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 FAM84BQ96KN1 310 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 U3KPZ7 1027 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-220ENST00000599716 LAMB1P07942 1786 aa10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 ALDH1A1P00352 501 aa10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 ZBTB48P10074 688 aaPredicted RBP10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 SUPT20HL1Q3ZLR7 823 aa10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 SPDYE2Q495Y8 402 aa10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 KLHDC4Q8TBB5 520 aa10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 TEPSINQ96N21 525 aa10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 C9orf78Q9NZ63 289 aaPredicted RBP10.96□□□□□ -0.65
SHKBP1-220ENST00000599716 ARAP2Q8WZ64 1704 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 FAM205AQ6ZU69 1335 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 NBPF7P0C2Y1 421 aaPredicted RBP10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 HIBADHP31937 336 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 CRKP46108 304 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 IREB2P48200 963 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 VGLL4Q14135 290 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 LRRC24Q50LG9 513 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 DZIP1LQ8IYY4 767 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 ANKRD13AQ8IZ07 590 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 TDRD7Q8NHU6 1098 aaKnown RBP10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 BRI3BPQ8WY22 251 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 DPF3Q92784 378 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 FAM122AQ96E09 287 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 PPP2R3BQ9Y5P8 575 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 CDH23Q9H251 3354 aa10.95□□□□□ -0.66
SHKBP1-220ENST00000599716 MMP14P50281 582 aa10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 INHBEP58166 350 aa10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 FKBP1AP62942 108 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 FAM43AQ8N2R8 423 aa10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 MS4A4AQ96JQ5 239 aa10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 ARHGAP39Q9C0H5 1083 aa10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 BICC1Q9H694 974 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 EFCC1Q9HA90 598 aa10.94□□□□□ -0.66
SHKBP1-220ENST00000599716 CCL15-CCL14A0A0B4J2E2 113 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 SP3Q02447 781 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 CCL15Q16663 113 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 SLC4A8Q2Y0W8 1093 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 WDR63Q8IWG1 891 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 FAM9BQ8IZU0 186 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 ZKSCAN4Q969J2 545 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 ERO1AQ96HE7 468 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 SRCIN1Q9C0H9 1055 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 RIPOR2Q9Y4F9 1068 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 NR2E3Q9Y5X4 410 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 PTCH2Q9Y6C5 1203 aa10.93□□□□□ -0.66
SHKBP1-220ENST00000599716 TESPA1A2RU30 521 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 BCAMP50895 628 aa10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 UBE4AQ14139 1066 aa10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 TAF1CQ15572 869 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 NBPF11Q86T75 865 aa10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 ANKRD44Q8N8A2 993 aa10.92□□□□□ -0.66
SHKBP1-220ENST00000599716 MTMR10Q9NXD2 777 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms