RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PTPN18Q99952 460 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 PUS3Q9BZE2 481 aaKnown RBP15.78■□□□□ 0.12
TRIM28-212ENST00000597995 PTPN22Q9Y2R2 807 aa15.78■□□□□ 0.12
TRIM28-212ENST00000597995 CRKP46108 304 aa15.77■□□□□ 0.12
TRIM28-212ENST00000597995 SP3Q02447 781 aa15.77■□□□□ 0.12
TRIM28-212ENST00000597995 RABL6Q3YEC7 729 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-212ENST00000597995 OPTNQ96CV9 577 aa15.77■□□□□ 0.12
TRIM28-212ENST00000597995 MS4A4AQ96JQ5 239 aa15.77■□□□□ 0.12
TRIM28-212ENST00000597995 HTTP42858 3142 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 NBPF7P0C2Y1 421 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-212ENST00000597995 MAP3K9P80192 1104 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-212ENST00000597995 CD99L2Q8TCZ2 262 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 TBC1D22AQ8WUA7 517 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 MRIQ9BWK5 157 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 ELP3Q9H9T3 547 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 EFCC1Q9HA90 598 aa15.76■□□□□ 0.11
TRIM28-212ENST00000597995 TCP10L2B9ZVM9 353 aa15.75■□□□□ 0.11
TRIM28-212ENST00000597995 ARHGEF6Q15052 776 aa15.75■□□□□ 0.11
TRIM28-212ENST00000597995 CAVIN4Q5BKX8 364 aa15.75■□□□□ 0.11
TRIM28-212ENST00000597995 VPS37DQ86XT2 251 aa15.75■□□□□ 0.11
TRIM28-212ENST00000597995 ARMC5Q96C12 935 aa15.75■□□□□ 0.11
TRIM28-212ENST00000597995 CCER2I3L3R5 266 aa15.74■□□□□ 0.11
TRIM28-212ENST00000597995 GTF2A2P52657 109 aa15.74■□□□□ 0.11
TRIM28-212ENST00000597995 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.74■□□□□ 0.117e-7■□□□□ 11
TRIM28-212ENST00000597995 GCC1Q96CN9 775 aa15.74■□□□□ 0.11
TRIM28-212ENST00000597995 TMEM39BQ9GZU3 492 aa15.74■□□□□ 0.11
TRIM28-212ENST00000597995 BICC1Q9H694 974 aaKnown RBP15.74■□□□□ 0.11
TRIM28-212ENST00000597995 CSADQ9Y600 493 aa15.74■□□□□ 0.11
TRIM28-212ENST00000597995 ARAP2Q8WZ64 1704 aa15.74■□□□□ 0.11
TRIM28-212ENST00000597995 POTEFA5A3E0 1075 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 FRAT2O75474 233 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-212ENST00000597995 PDE8BO95263 885 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 SLFN5Q08AF3 891 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 VGLL4Q14135 290 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 GRIK5Q16478 980 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 METTL24Q5JXM2 366 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 CDAN1Q8IWY9 1227 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 BRI3BPQ8WY22 251 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 TEKT1Q969V4 418 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 CDCA7LQ96GN5 454 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 ZFYVE28Q9HCC9 887 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 SUGT1Q9Y2Z0 365 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 KIAA0100Q14667 2235 aaKnown RBP15.73■□□□□ 0.11
TRIM28-212ENST00000597995 OTOFQ9HC10 1997 aa15.73■□□□□ 0.11
TRIM28-212ENST00000597995 CCL15-CCL14A0A0B4J2E2 113 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 TAF1CQ15572 869 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-212ENST00000597995 CCL15Q16663 113 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 LRRC24Q50LG9 513 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 FKBP1CQ5VVH2 108 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 FAM83AQ86UY5 434 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 ANKRD44Q8N8A2 993 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 VGLL2Q8N8G2 317 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 ZDHHC15Q96MV8 337 aa15.72■□□□□ 0.11
TRIM28-212ENST00000597995 IQSEC3Q9UPP2 1182 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-212ENST00000597995 PTPRCP08575 1304 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 KIF16BQ96L93 1317 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 SPDYE5A6NIY4 337 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 E9PSI1 815 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 CHAF1AQ13111 956 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-212ENST00000597995 MRPL50Q8N5N7 158 aaKnown RBP15.71■□□□□ 0.11
TRIM28-212ENST00000597995 CNKSR2Q8WXI2 1034 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 HOOK2Q96ED9 719 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 ZCCHC17Q9NP64 241 aaKnown RBP15.71■□□□□ 0.11
TRIM28-212ENST00000597995 TMOD2Q9NZR1 351 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 MKI67P46013 3256 aaKnown RBP15.71■□□□□ 0.11
TRIM28-212ENST00000597995 CENPFP49454 3210 aa15.71■□□□□ 0.11
TRIM28-212ENST00000597995 MAST3O60307 1309 aa15.7■□□□□ 0.1
TRIM28-212ENST00000597995 RBBP6Q7Z6E9 1792 aaKnown RBP15.7■□□□□ 0.1
TRIM28-212ENST00000597995 WDHD1O75717 1129 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-212ENST00000597995 BCAMP50895 628 aa15.7■□□□□ 0.1
TRIM28-212ENST00000597995 CAP1Q01518 475 aa15.7■□□□□ 0.1
TRIM28-212ENST00000597995 ERO1BQ86YB8 467 aa15.7■□□□□ 0.1
TRIM28-212ENST00000597995 TRMT2AQ8IZ69 625 aaKnown RBP15.7■□□□□ 0.1
TRIM28-212ENST00000597995 FAM43AQ8N2R8 423 aa15.7■□□□□ 0.1
TRIM28-212ENST00000597995 OTUD5Q96G74 571 aa15.7■□□□□ 0.1
TRIM28-212ENST00000597995 IFIT1P09914 478 aaKnown RBP15.69■□□□□ 0.1
TRIM28-212ENST00000597995 CETPP11597 493 aa15.69■□□□□ 0.1
TRIM28-212ENST00000597995 FGFR2P21802 821 aa15.69■□□□□ 0.1
TRIM28-212ENST00000597995 PUM3Q15397 648 aaKnown RBP15.69■□□□□ 0.1
TRIM28-212ENST00000597995 APOBEC3HQ6NTF7 200 aaKnown RBP15.69■□□□□ 0.1
TRIM28-212ENST00000597995 HHIPL2Q6UWX4 724 aa15.69■□□□□ 0.1
TRIM28-212ENST00000597995 NBPF11Q86T75 865 aa15.69■□□□□ 0.1
TRIM28-212ENST00000597995 TMEM106CQ9BVX2 250 aa15.69■□□□□ 0.1
TRIM28-212ENST00000597995 SNCAIPQ9Y6H5 919 aa15.69■□□□□ 0.1
TRIM28-212ENST00000597995 CACNB3P54284 484 aa15.68■□□□□ 0.1
TRIM28-212ENST00000597995 SSH1Q8WYL5 1049 aa15.68■□□□□ 0.1
TRIM28-212ENST00000597995 ZNF333Q96JL9 665 aa15.68■□□□□ 0.1
TRIM28-212ENST00000597995 USP44Q9H0E7 712 aa15.68■□□□□ 0.1
TRIM28-212ENST00000597995 RPAP1Q9BWH6 1393 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-212ENST00000597995 TLR2O60603 784 aa15.67■□□□□ 0.1
TRIM28-212ENST00000597995 EN2P19622 333 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-212ENST00000597995 SNAPC2Q13487 334 aa15.67■□□□□ 0.1
TRIM28-212ENST00000597995 DCAF15Q66K64 600 aa15.67■□□□□ 0.1
TRIM28-212ENST00000597995 WDR66Q8TBY9 1149 aa15.67■□□□□ 0.1
TRIM28-212ENST00000597995 WRNIP1Q96S55 665 aa15.67■□□□□ 0.1
TRIM28-212ENST00000597995 EYA2O00167 538 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 IRF6O14896 467 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 GNRH1P01148 92 aa15.66■□□□□ 0.1
TRIM28-212ENST00000597995 PPIL2Q13356 520 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms