RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	OTOF	Q9HC10	1997 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	FRAT2	O75474	233 aa	Predicted RBP	13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	PDE8B	O95263	885 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	IREB2	P48200	963 aa	Known RBP	13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	BCAM	P50895	628 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	SLFN5	Q08AF3	891 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	TNFAIP1	Q13829	316 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	PKN2	Q16513	984 aa	Known RBP	13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	CDCA7L	Q96GN5	454 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	TEPSIN	Q96N21	525 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	TMEM39B	Q9GZU3	492 aa		13.23	□□□□□ -0.29
LSM4-205	ENST00000597776	ALDH1A1	P00352	501 aa		13.22	□□□□□ -0.29
LSM4-205	ENST00000597776	CACNB3	P54284	484 aa		13.22	□□□□□ -0.29
LSM4-205	ENST00000597776	CAVIN4	Q5BKX8	364 aa		13.22	□□□□□ -0.29
LSM4-205	ENST00000597776	ANKRD13A	Q8IZ07	590 aa		13.22	□□□□□ -0.29
LSM4-205	ENST00000597776	ELP3	Q9H9T3	547 aa		13.22	□□□□□ -0.29
LSM4-205	ENST00000597776	LAMB1	P07942	1786 aa		13.22	□□□□□ -0.29
LSM4-205	ENST00000597776	UNCX	A6NJT0	531 aa		13.21	□□□□□ -0.29
LSM4-205	ENST00000597776	INHBE	P58166	350 aa		13.21	□□□□□ -0.29
LSM4-205	ENST00000597776	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.21	□□□□□ -0.29
LSM4-205	ENST00000597776	CNKSR2	Q8WXI2	1034 aa		13.21	□□□□□ -0.29
LSM4-205	ENST00000597776	OPTN	Q96CV9	577 aa		13.21	□□□□□ -0.29
LSM4-205	ENST00000597776	SMC4	Q9NTJ3	1288 aa		13.21	□□□□□ -0.29
LSM4-205	ENST00000597776	FGFR2	P21802	821 aa		13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	RFX5	P48382	616 aa	Predicted RBP	13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	CRHR2	Q13324	411 aa		13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	PUM3	Q15397	648 aa	Known RBP	13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	TBC1D22A	Q8WUA7	517 aa		13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	TEKT1	Q969V4	418 aa		13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	PTPN18	Q99952	460 aa		13.2	□□□□□ -0.3
LSM4-205	ENST00000597776	EYA2	O00167	538 aa		13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	IFIT1	P09914	478 aa	Known RBP	13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	TNNI2	P48788	182 aa		13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	HDLBP	Q00341	1268 aa	Known RBP	13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	VGLL4	Q14135	290 aa		13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	ALDH1L2	Q3SY69	923 aa		13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	TRIM17	Q9Y577	477 aa		13.19	□□□□□ -0.3
LSM4-205	ENST00000597776	CENPF	P49454	3210 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	OTOP1	Q7RTM1	612 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	ATG9A	Q7Z3C6	839 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	CD99L2	Q8TCZ2	262 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	MS4A4A	Q96JQ5	239 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	ZDHHC15	Q96MV8	337 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	SIL1	Q9H173	461 aa		13.18	□□□□□ -0.3
LSM4-205	ENST00000597776	KIF16B	Q96L93	1317 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	TESPA1	A2RU30	521 aa	Predicted RBP	13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	SLC34A2	O95436	690 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	UBTFL1	P0CB47	393 aa	Predicted RBP	13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	SLC5A1	P13866	664 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	MAP3K9	P80192	1104 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	CAP1	Q01518	475 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	TRMT2A	Q8IZ69	625 aa	Known RBP	13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	BRI3BP	Q8WY22	251 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	LPIN2	Q92539	896 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	OTUD5	Q96G74	571 aa		13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	NOB1	Q9ULX3	412 aa	Known RBP	13.17	□□□□□ -0.3
LSM4-205	ENST00000597776	OTUD7B	Q6GQQ9	843 aa		13.16	□□□□□ -0.3
LSM4-205	ENST00000597776	TMOD2	Q9NZR1	351 aa		13.16	□□□□□ -0.3
LSM4-205	ENST00000597776	CSAD	Q9Y600	493 aa		13.16	□□□□□ -0.3
LSM4-205	ENST00000597776	PDE4DIP	Q5VU43	2346 aa		13.16	□□□□□ -0.3
LSM4-205	ENST00000597776	MAST3	O60307	1309 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	CCL15-CCL14	A0A0B4J2E2	113 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	CCL15	Q16663	113 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	ERO1A	Q96HE7	468 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	WRNIP1	Q96S55	665 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	MRI	Q9BWK5	157 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	PA2G4	Q9UQ80	394 aa	Known RBP	13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	SUGT1	Q9Y2Z0	365 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	LRRFIP2	Q9Y608	721 aa	Known RBP	13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	SNCAIP	Q9Y6H5	919 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	MYH13	Q9UKX3	1938 aa		13.15	□□□□□ -0.3
LSM4-205	ENST00000597776	MKI67	P46013	3256 aa	Known RBP	13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	SPDYE5	A6NIY4	337 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	PRDX5	P30044	214 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	GTF2A2	P52657	109 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	SP3	Q02447	781 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	DIXDC1	Q155Q3	683 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	ATP2B3	Q16720	1220 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	FKBP1C	Q5VVH2	108 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	HHIPL2	Q6UWX4	724 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	FAM83A	Q86UY5	434 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	FAM43A	Q8N2R8	423 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	WDR66	Q8TBY9	1149 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	MEIS3	Q99687	375 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	DAGLA	Q9Y4D2	1042 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	BRCA2	P51587	3418 aa		13.14	□□□□□ -0.31
LSM4-205	ENST00000597776	CIAO1	O76071	339 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	PHKA1	P46020	1223 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	TCP10	Q12799	353 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	TAF1C	Q15572	869 aa	Predicted RBP	13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	MIGA2	Q7L4E1	593 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	EFCC1	Q9HA90	598 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	CEP126	Q9P2H0	1117 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	PTPN22	Q9Y2R2	807 aa		13.13	□□□□□ -0.31
LSM4-205	ENST00000597776	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.12	□□□□□ -0.31
LSM4-205	ENST00000597776	POTEF	A5A3E0	1075 aa		13.12	□□□□□ -0.31

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