RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 SERPINA10Q9UK55 444 aa20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 TTF2Q9UNY4 1162 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 SALL2Q9Y467 1007 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-215ENST00000597649 CCER2I3L3R5 266 aa20.86■□□□□ 0.93
SHKBP1-215ENST00000597649 HIBADHP31937 336 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-215ENST00000597649 TAF7LQ5H9L4 462 aa20.86■□□□□ 0.93
SHKBP1-215ENST00000597649 GCC1Q96CN9 775 aa20.86■□□□□ 0.93
SHKBP1-215ENST00000597649 TMEM39BQ9GZU3 492 aa20.86■□□□□ 0.93
SHKBP1-215ENST00000597649 A0A1B0GUL6 1792 aa20.86■□□□□ 0.93
SHKBP1-215ENST00000597649 ECM29Q5VYK3 1845 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 TCP10L2B9ZVM9 353 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 UBE4AQ14139 1066 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 WDR63Q8IWG1 891 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 KAZALD1Q96I82 304 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 CEP290O15078 2479 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 LAMB1P07942 1786 aa20.85■□□□□ 0.93
SHKBP1-215ENST00000597649 MAP3K9P80192 1104 aa20.84■□□□□ 0.93
SHKBP1-215ENST00000597649 VGLL4Q14135 290 aa20.84■□□□□ 0.93
SHKBP1-215ENST00000597649 CRKP46108 304 aa20.83■□□□□ 0.93
SHKBP1-215ENST00000597649 TNFAIP1Q13829 316 aa20.83■□□□□ 0.93
SHKBP1-215ENST00000597649 FAM43AQ8N2R8 423 aa20.83■□□□□ 0.93
SHKBP1-215ENST00000597649 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.83■□□□□ 0.93
SHKBP1-215ENST00000597649 ZNF333Q96JL9 665 aa20.83■□□□□ 0.93
SHKBP1-215ENST00000597649 RIPOR2Q9Y4F9 1068 aa20.83■□□□□ 0.93
SHKBP1-215ENST00000597649 FBXO33Q7Z6M2 555 aa20.82■□□□□ 0.92
SHKBP1-215ENST00000597649 SUCLG2Q96I99 432 aa20.82■□□□□ 0.92
SHKBP1-215ENST00000597649 C9orf78Q9NZ63 289 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-215ENST00000597649 SZT2Q5T011 3432 aa20.82■□□□□ 0.92
SHKBP1-215ENST00000597649 CACNA1FO60840 1977 aa20.81■□□□□ 0.92
SHKBP1-215ENST00000597649 CCL15-CCL14A0A0B4J2E2 113 aa20.81■□□□□ 0.92
SHKBP1-215ENST00000597649 CCL15Q16663 113 aa20.81■□□□□ 0.92
SHKBP1-215ENST00000597649 IQSEC3Q9UPP2 1182 aaPredicted RBP20.81■□□□□ 0.92
SHKBP1-215ENST00000597649 PTCH2Q9Y6C5 1203 aa20.81■□□□□ 0.92
SHKBP1-215ENST00000597649 OTOFQ9HC10 1997 aa20.8■□□□□ 0.92
SHKBP1-215ENST00000597649 GTF2A2P52657 109 aa20.8■□□□□ 0.92
SHKBP1-215ENST00000597649 CACNB3P54284 484 aa20.8■□□□□ 0.92
SHKBP1-215ENST00000597649 TAF1CQ15572 869 aaPredicted RBP20.8■□□□□ 0.92
SHKBP1-215ENST00000597649 ZFYVE28Q9HCC9 887 aa20.8■□□□□ 0.92
SHKBP1-215ENST00000597649 ALDH1L1O75891 902 aa20.79■□□□□ 0.92
SHKBP1-215ENST00000597649 NBPF7P0C2Y1 421 aaPredicted RBP20.79■□□□□ 0.92
SHKBP1-215ENST00000597649 SLC4A10Q6U841 1118 aa20.79■□□□□ 0.92
SHKBP1-215ENST00000597649 OTUD5Q96G74 571 aa20.79■□□□□ 0.92
SHKBP1-215ENST00000597649 RANBP2P49792 3224 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-215ENST00000597649 LRRC24Q50LG9 513 aa20.78■□□□□ 0.92
SHKBP1-215ENST00000597649 FAM9BQ8IZU0 186 aa20.78■□□□□ 0.92
SHKBP1-215ENST00000597649 TMEM106CQ9BVX2 250 aa20.78■□□□□ 0.92
SHKBP1-215ENST00000597649 ARHGAP39Q9C0H5 1083 aa20.78■□□□□ 0.92
SHKBP1-215ENST00000597649 SNCAIPQ9Y6H5 919 aa20.78■□□□□ 0.92
SHKBP1-215ENST00000597649 CHAF1AQ13111 956 aaPredicted RBP20.77■□□□□ 0.92
SHKBP1-215ENST00000597649 SRCIN1Q9C0H9 1055 aa20.77■□□□□ 0.92
SHKBP1-215ENST00000597649 CSADQ9Y600 493 aa20.77■□□□□ 0.92
SHKBP1-215ENST00000597649 RBBP6Q7Z6E9 1792 aaKnown RBP20.77■□□□□ 0.91
SHKBP1-215ENST00000597649 SPDYE5A6NIY4 337 aa20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 MYCP01106 439 aaPredicted RBP20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 TNNI2P48788 182 aa20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 HDLBPQ00341 1268 aaKnown RBP20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 SLC9C1Q4G0N8 1177 aa20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 ZKSCAN4Q969J2 545 aaPredicted RBP20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 MROH5Q6ZUA9 1318 aa20.76■□□□□ 0.91
SHKBP1-215ENST00000597649 BTBD19C9JJ37 291 aa20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 BCAMP50895 628 aa20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 FXR1P51114 621 aaKnown RBP eCLIP20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 APOBEC3HQ6NTF7 200 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 NBPF11Q86T75 865 aa20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 ANKRD44Q8N8A2 993 aa20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 VGLL2Q8N8G2 317 aa20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 BICC1Q9H694 974 aaKnown RBP20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 UTYO14607 1347 aa20.75■□□□□ 0.91
SHKBP1-215ENST00000597649 TRIOBPQ9H2D6 2365 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 IRF6O14896 467 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 TLR2O60603 784 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 ARHGEF6Q15052 776 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 RABL6Q3YEC7 729 aaPredicted RBP20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 VPS37DQ86XT2 251 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 SH3TC2Q8TF17 1288 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 ZDHHC15Q96MV8 337 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 MRIQ9BWK5 157 aa20.74■□□□□ 0.91
SHKBP1-215ENST00000597649 SLC4A8Q2Y0W8 1093 aa20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 ERO1BQ86YB8 467 aa20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 KLHDC4Q8TBB5 520 aa20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 TBC1D22AQ8WUA7 517 aa20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 TEKT1Q969V4 418 aa20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 WRNIP1Q96S55 665 aa20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 COLQQ9Y215 455 aaPredicted RBP20.73■□□□□ 0.91
SHKBP1-215ENST00000597649 PDE8BO95263 885 aa20.72■□□□□ 0.91
SHKBP1-215ENST00000597649 CETPP11597 493 aa20.72■□□□□ 0.91
SHKBP1-215ENST00000597649 CTGFP29279 349 aa20.72■□□□□ 0.91
SHKBP1-215ENST00000597649 LACTBP83111 547 aaPredicted RBP20.72■□□□□ 0.91
SHKBP1-215ENST00000597649 METTL24Q5JXM2 366 aa20.72■□□□□ 0.91
SHKBP1-215ENST00000597649 ARAP2Q8WZ64 1704 aa20.71■□□□□ 0.91
SHKBP1-215ENST00000597649 FRAT2O75474 233 aaPredicted RBP20.71■□□□□ 0.91
SHKBP1-215ENST00000597649 SNAPC2Q13487 334 aa20.71■□□□□ 0.91
SHKBP1-215ENST00000597649 CAVIN4Q5BKX8 364 aa20.71■□□□□ 0.91
SHKBP1-215ENST00000597649 FAM83AQ86UY5 434 aa20.71■□□□□ 0.91
SHKBP1-215ENST00000597649 ECM2O94769 699 aaPredicted RBP20.7■□□□□ 0.9
SHKBP1-215ENST00000597649 PPIL2Q13356 520 aa20.7■□□□□ 0.9
SHKBP1-215ENST00000597649 FKBP1CQ5VVH2 108 aa20.7■□□□□ 0.9
SHKBP1-215ENST00000597649 MIGA2Q7L4E1 593 aa20.7■□□□□ 0.9
SHKBP1-215ENST00000597649 ZCCHC17Q9NP64 241 aaKnown RBP20.7■□□□□ 0.9
SHKBP1-215ENST00000597649 ZSWIM8A7E2V4 1837 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms