RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 APBB1O00213 710 aa18.43■□□□□ 0.54
UPF1-202ENST00000594243 FMR1Q06787 632 aaKnown RBP eCLIP18.43■□□□□ 0.542e-6■■■■□ 22.8
UPF1-202ENST00000594243 AACSQ86V21 672 aa18.43■□□□□ 0.54
UPF1-202ENST00000594243 APOBEC3FQ8IUX4 373 aaKnown RBP18.43■□□□□ 0.54
UPF1-202ENST00000594243 SPATA5Q8NB90 893 aa18.43■□□□□ 0.54
UPF1-202ENST00000594243 ZNF512BQ96KM6 892 aaPredicted RBP18.43■□□□□ 0.54
UPF1-202ENST00000594243 IL1RAPL2Q9NP60 686 aa18.43■□□□□ 0.54
UPF1-202ENST00000594243 HMG20BQ9P0W2 317 aa18.43■□□□□ 0.54
UPF1-202ENST00000594243 PCDHB15Q9Y5E8 787 aa18.43■□□□□ 0.54
UPF1-202ENST00000594243 COL1A1P02452 1464 aaPredicted RBP18.42■□□□□ 0.54
UPF1-202ENST00000594243 ADM5C9JUS6 153 aa18.42■□□□□ 0.54
UPF1-202ENST00000594243 CELF2O95319 508 aaKnown RBP18.42■□□□□ 0.54
UPF1-202ENST00000594243 CST9Q5W186 159 aa18.42■□□□□ 0.54
UPF1-202ENST00000594243 HHIPL2Q6UWX4 724 aa18.42■□□□□ 0.54
UPF1-202ENST00000594243 DCTPP1Q9H773 170 aa18.42■□□□□ 0.54
UPF1-202ENST00000594243 ABCF2Q9UG63 623 aa18.42■□□□□ 0.54
UPF1-202ENST00000594243 DBNLQ9UJU6 430 aaKnown RBP18.42■□□□□ 0.54
UPF1-202ENST00000594243 PCDHAC2Q9Y5I4 1007 aa18.42■□□□□ 0.54
UPF1-202ENST00000594243 IFIT2P09913 472 aaKnown RBP18.41■□□□□ 0.54
UPF1-202ENST00000594243 PRDX5P30044 214 aa18.41■□□□□ 0.54
UPF1-202ENST00000594243 MCAMP43121 646 aa18.41■□□□□ 0.54
UPF1-202ENST00000594243 ZDHHC15Q96MV8 337 aa18.41■□□□□ 0.54
UPF1-202ENST00000594243 LRRCC1Q9C099 1032 aa18.41■□□□□ 0.54
UPF1-202ENST00000594243 ZNF408Q9H9D4 720 aa18.41■□□□□ 0.54
UPF1-202ENST00000594243 MYH13Q9UKX3 1938 aa18.41■□□□□ 0.54
UPF1-202ENST00000594243 ERICH6Q7L0X2 663 aa18.4■□□□□ 0.54
UPF1-202ENST00000594243 SLF2Q8IX21 1173 aa18.4■□□□□ 0.54
UPF1-202ENST00000594243 DNAJC5GQ8N7S2 189 aa18.4■□□□□ 0.54
UPF1-202ENST00000594243 TLR7Q9NYK1 1049 aaKnown RBP18.4■□□□□ 0.54
UPF1-202ENST00000594243 ABT1Q9ULW3 272 aaKnown RBP18.4■□□□□ 0.54
UPF1-202ENST00000594243 CLRN2A0PK11 232 aa18.39■□□□□ 0.53
UPF1-202ENST00000594243 DLK2Q6UY11 383 aa18.39■□□□□ 0.53
UPF1-202ENST00000594243 CDCA5Q96FF9 252 aa18.39■□□□□ 0.53
UPF1-202ENST00000594243 TDRD3Q9H7E2 651 aaKnown RBP18.39■□□□□ 0.53
UPF1-202ENST00000594243 TNFAIP1Q13829 316 aa18.38■□□□□ 0.53
UPF1-202ENST00000594243 SPDYE2Q495Y8 402 aa18.38■□□□□ 0.53
UPF1-202ENST00000594243 PI16Q6UXB8 463 aa18.38■□□□□ 0.53
UPF1-202ENST00000594243 DZIP1Q86YF9 867 aaKnown RBP18.38■□□□□ 0.53
UPF1-202ENST00000594243 C2orf69Q8N8R5 385 aa18.38■□□□□ 0.53
UPF1-202ENST00000594243 VEZTQ9HBM0 779 aa18.38■□□□□ 0.53
UPF1-202ENST00000594243 ZNF70Q9UC06 446 aaPredicted RBP18.38■□□□□ 0.53
UPF1-202ENST00000594243 SCAF8Q9UPN6 1271 aaKnown RBP18.38■□□□□ 0.53
UPF1-202ENST00000594243 PPP2R3BQ9Y5P8 575 aa18.38■□□□□ 0.53
UPF1-202ENST00000594243 IGSF3O75054 1194 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 NF2P35240 595 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 TNNI2P48788 182 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 DEFB115Q30KQ5 88 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 APOBEC3HQ6NTF7 200 aaKnown RBP18.37■□□□□ 0.53
UPF1-202ENST00000594243 KLRG1Q96E93 195 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 BCL11AQ9H165 835 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 DEFB129Q9H1M3 183 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 SNRKQ9NRH2 765 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 TMOD2Q9NZR1 351 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 LRP2BPQ9P2M1 347 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 TLL2Q9Y6L7 1015 aa18.37■□□□□ 0.53
UPF1-202ENST00000594243 RASSF10A6NK89 507 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 PCNTO95613 3336 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 GSTO1P78417 241 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 DIXDC1Q155Q3 683 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 TBC1D9Q6ZT07 1266 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 EXOC6Q8TAG9 804 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 GBA2Q9HCG7 927 aaPredicted RBP18.36■□□□□ 0.53
UPF1-202ENST00000594243 RAI14Q9P0K7 980 aa18.36■□□□□ 0.53
UPF1-202ENST00000594243 POLR2AP24928 1970 aaKnown RBP18.35■□□□□ 0.53
UPF1-202ENST00000594243 TRPM7Q96QT4 1865 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 CYP2E1P05181 493 aaPredicted RBP18.35■□□□□ 0.53
UPF1-202ENST00000594243 LDHCP07864 332 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 ZAP70P43403 619 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 FKBP1BP68106 108 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 MECOMQ03112 1051 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 HDAC1Q13547 482 aaPredicted RBP18.35■□□□□ 0.53
UPF1-202ENST00000594243 PRAMEF18Q5VWM3 479 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 SAPCD2Q86UD0 394 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 FAM163AQ96GL9 167 aaPredicted RBP18.35■□□□□ 0.53
UPF1-202ENST00000594243 HHIPL1Q96JK4 782 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 MKRN1Q9UHC7 482 aaKnown RBP18.35■□□□□ 0.53
UPF1-202ENST00000594243 DAGLAQ9Y4D2 1042 aa18.35■□□□□ 0.53
UPF1-202ENST00000594243 AOX1Q06278 1338 aa18.34■□□□□ 0.53
UPF1-202ENST00000594243 SMARCA5O60264 1052 aaPredicted RBP18.34■□□□□ 0.53
UPF1-202ENST00000594243 RASA3Q14644 834 aa18.34■□□□□ 0.53
UPF1-202ENST00000594243 SUPT20HL1Q3ZLR7 823 aa18.34■□□□□ 0.53
UPF1-202ENST00000594243 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.34■□□□□ 0.53
UPF1-202ENST00000594243 CNTNAP1P78357 1384 aa18.33■□□□□ 0.53
UPF1-202ENST00000594243 ECM29Q5VYK3 1845 aa18.33■□□□□ 0.53
UPF1-202ENST00000594243 TCP10L2B9ZVM9 353 aa18.33■□□□□ 0.52
UPF1-202ENST00000594243 FKBP1CQ5VVH2 108 aa18.33■□□□□ 0.52
UPF1-202ENST00000594243 NSUN4Q96CB9 384 aaKnown RBP18.33■□□□□ 0.52
UPF1-202ENST00000594243 GCC1Q96CN9 775 aa18.33■□□□□ 0.52
UPF1-202ENST00000594243 RWDD1Q9H446 243 aaPredicted RBP18.33■□□□□ 0.52
UPF1-202ENST00000594243 ZBTB47Q9UFB7 747 aaPredicted RBP18.33■□□□□ 0.52
UPF1-202ENST00000594243 GAKO14976 1311 aa18.32■□□□□ 0.52
UPF1-202ENST00000594243 ECE1P42892 770 aa18.32■□□□□ 0.52
UPF1-202ENST00000594243 HUNKP57058 714 aa18.32■□□□□ 0.52
UPF1-202ENST00000594243 TTF1Q15361 905 aaPredicted RBP18.32■□□□□ 0.52
UPF1-202ENST00000594243 FAM83AQ86UY5 434 aa18.32■□□□□ 0.52
UPF1-202ENST00000594243 USP40Q9NVE5 1235 aa18.32■□□□□ 0.52
UPF1-202ENST00000594243 MROH7-TTC4A0A0A0MT08 1334 aa18.31■□□□□ 0.52
UPF1-202ENST00000594243 ATP5JP18859 108 aa18.31■□□□□ 0.52
UPF1-202ENST00000594243 TTLL12Q14166 644 aaPredicted RBP18.31■□□□□ 0.52
UPF1-202ENST00000594243 CDC42EP5Q6NZY7 148 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms