RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 FAAP100Q0VG06 881 aa8.29□□□□□ -1.08
SMAD4-216ENST00000593223 ACAD11Q709F0 780 aa8.29□□□□□ -1.08
SMAD4-216ENST00000593223 CD163Q86VB7 1156 aa8.29□□□□□ -1.08
SMAD4-216ENST00000593223 CEP44Q9C0F1 390 aa8.29□□□□□ -1.08
SMAD4-216ENST00000593223 TMEM39AQ9NV64 488 aa8.29□□□□□ -1.08
SMAD4-216ENST00000593223 PPM1HQ9ULR3 514 aa8.29□□□□□ -1.08
SMAD4-216ENST00000593223 ADAM11O75078 769 aa8.28□□□□□ -1.08
SMAD4-216ENST00000593223 CYP11A1P05108 521 aa8.28□□□□□ -1.08
SMAD4-216ENST00000593223 UBASH3BQ8TF42 649 aa8.28□□□□□ -1.08
SMAD4-216ENST00000593223 RBM47A0AV96 593 aaKnown RBP8.27□□□□□ -1.09
SMAD4-216ENST00000593223 POU4F3Q15319 338 aa8.27□□□□□ -1.09
SMAD4-216ENST00000593223 PLA2G4EQ3MJ16 856 aa8.27□□□□□ -1.09
SMAD4-216ENST00000593223 CORO1BQ9BR76 489 aa8.27□□□□□ -1.09
SMAD4-216ENST00000593223 AKTIPQ9H8T0 292 aa8.27□□□□□ -1.09
SMAD4-216ENST00000593223 TM4SF5O14894 197 aa8.26□□□□□ -1.09
SMAD4-216ENST00000593223 WISP1O95388 367 aa8.26□□□□□ -1.09
SMAD4-216ENST00000593223 MAOBP27338 520 aa8.26□□□□□ -1.09
SMAD4-216ENST00000593223 AP3B2Q13367 1082 aa8.26□□□□□ -1.09
SMAD4-216ENST00000593223 MBTPS1Q14703 1052 aa8.26□□□□□ -1.09
SMAD4-216ENST00000593223 AGGF1Q8N302 714 aaeCLIP8.26□□□□□ -1.09
SMAD4-216ENST00000593223 RUSC1Q9BVN2 902 aa8.26□□□□□ -1.09
SMAD4-216ENST00000593223 F8W735 103 aaPredicted RBP8.25□□□□□ -1.09
SMAD4-216ENST00000593223 ALX3O95076 343 aa8.25□□□□□ -1.09
SMAD4-216ENST00000593223 GATA4P43694 442 aa8.25□□□□□ -1.09
SMAD4-216ENST00000593223 IREB2P48200 963 aaKnown RBP8.25□□□□□ -1.09
SMAD4-216ENST00000593223 ADGRE1Q14246 886 aa8.25□□□□□ -1.09
SMAD4-216ENST00000593223 GPAT2Q6NUI2 795 aa8.25□□□□□ -1.09
SMAD4-216ENST00000593223 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.25□□□□□ -1.09
SMAD4-216ENST00000593223 WFDC12Q8WWY7 111 aa8.25□□□□□ -1.09
SMAD4-216ENST00000593223 TRIM56Q9BRZ2 755 aaKnown RBP8.25□□□□□ -1.09
SMAD4-216ENST00000593223 SAMM50Q9Y512 469 aa8.25□□□□□ -1.09
SMAD4-216ENST00000593223 LOC100289279A0A1B0GTE1 492 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 TAF1CQ15572 869 aaPredicted RBP8.24□□□□□ -1.09
SMAD4-216ENST00000593223 CCDC85BQ15834 202 aaPredicted RBP8.24□□□□□ -1.09
SMAD4-216ENST00000593223 HP1BP3Q5SSJ5 553 aaPredicted RBP8.24□□□□□ -1.09
SMAD4-216ENST00000593223 MEI1Q5TIA1 1274 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 KIAA1211Q6ZU35 1233 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 TXNRD3Q86VQ6 643 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 TMEM130Q8N3G9 435 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 CRELD1Q96HD1 420 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 NECAB3Q96P71 396 aaPredicted RBP8.24□□□□□ -1.09
SMAD4-216ENST00000593223 CBX8Q9HC52 389 aa8.24□□□□□ -1.09
SMAD4-216ENST00000593223 GLB1P16278 677 aa8.23□□□□□ -1.09
SMAD4-216ENST00000593223 PDE3AQ14432 1141 aa8.23□□□□□ -1.09
SMAD4-216ENST00000593223 XP32Q5T750 250 aa8.23□□□□□ -1.09
SMAD4-216ENST00000593223 NUTM2GQ5VZR2 741 aa8.23□□□□□ -1.09
SMAD4-216ENST00000593223 SULF2Q8IWU5 870 aa8.23□□□□□ -1.09
SMAD4-216ENST00000593223 ZC3H12CQ9C0D7 883 aaKnown RBP8.23□□□□□ -1.09
SMAD4-216ENST00000593223 RNF208Q9H0X6 261 aa8.23□□□□□ -1.09
SMAD4-216ENST00000593223 CELA3AP09093 270 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 CTSHP09668 335 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 NME2P22392 152 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 NOS3P29474 1203 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 SV2BQ7L1I2 683 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 KCNB2Q92953 911 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 EMILIN2Q9BXX0 1053 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 RAD18Q9NS91 495 aa8.22□□□□□ -1.09
SMAD4-216ENST00000593223 ENC1O14682 589 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 MSTNO14793 375 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 SART1O43290 800 aaKnown RBP8.21□□□□□ -1.1
SMAD4-216ENST00000593223 ECEL1O95672 775 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 ARNTP27540 789 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 HNRNPUQ00839 825 aaKnown RBP eCLIP8.21□□□□□ -1.1
SMAD4-216ENST00000593223 EXOSC6Q5RKV6 272 aaKnown RBP8.21□□□□□ -1.1
SMAD4-216ENST00000593223 FDX2Q6P4F2 183 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 ANKRD24Q8TF21 1146 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 CEP41Q9BYV8 373 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 NRSN2Q9GZP1 204 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 CYP4F12Q9HCS2 524 aa8.21□□□□□ -1.1
SMAD4-216ENST00000593223 PAGE1O75459 146 aa8.2□□□□□ -1.1
SMAD4-216ENST00000593223 ITGB2P05107 769 aa8.2□□□□□ -1.1
SMAD4-216ENST00000593223 GSTP1P09211 210 aaKnown RBP8.2□□□□□ -1.1
SMAD4-216ENST00000593223 MRPL58Q14197 206 aaKnown RBP8.2□□□□□ -1.1
SMAD4-216ENST00000593223 MAP3K11Q16584 847 aa8.2□□□□□ -1.1
SMAD4-216ENST00000593223 USP31Q70CQ4 1352 aa8.2□□□□□ -1.1
SMAD4-216ENST00000593223 DLGAP3O95886 979 aa8.19□□□□□ -1.1
SMAD4-216ENST00000593223 CTSBP07858 339 aa8.19□□□□□ -1.1
SMAD4-216ENST00000593223 LMNB1P20700 586 aa8.19□□□□□ -1.1
SMAD4-216ENST00000593223 ST13P50502 369 aaKnown RBP8.19□□□□□ -1.1
SMAD4-216ENST00000593223 PCNX4Q63HM2 1172 aa8.19□□□□□ -1.1
SMAD4-216ENST00000593223 MAP1SQ66K74 1059 aaPredicted RBP8.19□□□□□ -1.1
SMAD4-216ENST00000593223 ANKRD34AQ69YU3 496 aa8.19□□□□□ -1.1
SMAD4-216ENST00000593223 C12orf50Q8NA57 414 aaPredicted RBP8.19□□□□□ -1.1
SMAD4-216ENST00000593223 STK35Q8TDR2 534 aa8.19□□□□□ -1.1
SMAD4-216ENST00000593223 MEGF11A6BM72 1044 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 LRRC14Q15048 493 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 TSNAXIP1Q2TAA8 658 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 AKAP4Q5JQC9 854 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 TTBK2Q6IQ55 1244 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 TMEM87AQ8NBN3 555 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 MRRFQ96E11 262 aaKnown RBP8.18□□□□□ -1.1
SMAD4-216ENST00000593223 ACSBG1Q96GR2 724 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 SPOCK3Q9BQ16 436 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 TMPRSS13Q9BYE2 586 aa8.18□□□□□ -1.1
SMAD4-216ENST00000593223 CCDC86Q9H6F5 360 aaKnown RBP8.18□□□□□ -1.1
SMAD4-216ENST00000593223 IGHA1P01876 353 aa8.17□□□□□ -1.1
SMAD4-216ENST00000593223 LIG1P18858 919 aa8.17□□□□□ -1.1
SMAD4-216ENST00000593223 LLGL2Q6P1M3 1020 aa8.17□□□□□ -1.1
SMAD4-216ENST00000593223 TP53INP1Q96A56 240 aa8.17□□□□□ -1.1
SMAD4-216ENST00000593223 MEGF10Q96KG7 1140 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms