RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TPM1P09493 284 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 PHKA1P46020 1223 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 TCP10Q12799 353 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 DBNDD1Q9H9R9 158 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 RAB11FIP4Q86YS3 637 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 MAPKAPK5Q8IW41 473 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 SULF1Q8IWU6 871 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 CIZ1Q9ULV3 898 aaPredicted RBP11.42□□□□□ -0.58
LIG3-216ENST00000593099 MBD3O95983 291 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 TPM3P06753 285 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 BRD2P25440 801 aaKnown RBP11.42□□□□□ -0.58
LIG3-216ENST00000593099 CREB3L3Q68CJ9 461 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 WWC2Q6AWC2 1192 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 NDUFB9Q9Y6M9 179 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 RAB3GAP1Q15042 981 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 OLFM4Q6UX06 510 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 USP48Q86UV5 1035 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 DCPSQ96C86 337 aaKnown RBP11.42□□□□□ -0.58
LIG3-216ENST00000593099 SLC26A6Q9BXS9 759 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 LRRC2Q9BYS8 371 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 KIF1AQ12756 1690 aa11.42□□□□□ -0.58
LIG3-216ENST00000593099 IBTKQ9P2D0 1353 aaPredicted RBP11.42□□□□□ -0.58
LIG3-216ENST00000593099 SSBP05455 408 aaKnown RBP eCLIP11.41□□□□□ -0.58
LIG3-216ENST00000593099 SCNN1DP51172 638 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 PCMTD1Q96MG8 357 aaPredicted RBP11.41□□□□□ -0.58
LIG3-216ENST00000593099 LARP6Q9BRS8 491 aaKnown RBP11.41□□□□□ -0.58
LIG3-216ENST00000593099 ARHGEF10LQ9HCE6 1279 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 TGFBRAP1Q8WUH2 860 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 TCEANC2Q96MN5 208 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 RTL9Q8NET4 1388 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 MEGF6O75095 1541 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 PTPN12Q05209 780 aaKnown RBP11.41□□□□□ -0.58
LIG3-216ENST00000593099 CIAPIN1Q6FI81 312 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 FERMT3Q86UX7 667 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 TMOD4Q9NZQ9 345 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 RBM27Q9P2N5 1060 aaKnown RBP11.41□□□□□ -0.58
LIG3-216ENST00000593099 PRKG1Q13976 671 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 DCAF15Q66K64 600 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 CCDC129Q6ZRS4 1044 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 SMIM5Q71RC9 77 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 RAB34Q9BZG1 259 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 COA1Q9GZY4 146 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 ZHX3Q9H4I2 956 aa11.41□□□□□ -0.58
LIG3-216ENST00000593099 CEMIPQ8WUJ3 1361 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 ATP10DQ9P241 1426 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 RAD17O75943 681 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 CAMTA2O94983 1202 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 PDE6AP16499 860 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 ADORA1P30542 326 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 GUCY1B3Q02153 619 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 DHX32Q7L7V1 743 aaKnown RBP11.4□□□□□ -0.58
LIG3-216ENST00000593099 NEFHP12036 1026 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 CCDC148Q8NFR7 591 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 SPATA32Q96LK8 384 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 HAUS7Q99871 368 aa11.4□□□□□ -0.58
LIG3-216ENST00000593099 MYO5BQ9ULV0 1848 aa11.4□□□□□ -0.59
LIG3-216ENST00000593099 Q6ZUG5 572 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 PLEKHG2Q9H7P9 1386 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 B4DLN1 442 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 MRPL12P52815 198 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 FAM227BQ96M60 508 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 CSADQ9Y600 493 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 PRPF40AO75400 957 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 SYNE4Q8N205 404 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 EDC3Q96F86 508 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 DBNLQ9UJU6 430 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 BAG4O95429 457 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 PLS1Q14651 629 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 TMEM266Q2M3C6 531 aa11.39□□□□□ -0.59
LIG3-216ENST00000593099 NOC3LQ8WTT2 800 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 NAT10Q9H0A0 1025 aaKnown RBP11.39□□□□□ -0.59
LIG3-216ENST00000593099 USP17L3A6NCW0 530 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 USP17L4A6NCW7 530 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 BTDP43251 543 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 SETQ01105 290 aaPredicted RBP11.38□□□□□ -0.59
LIG3-216ENST00000593099 USP17L1Q7RTZ2 530 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 TNS2Q63HR2 1409 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 PPP1R12BO60237 982 aaPredicted RBP11.38□□□□□ -0.59
LIG3-216ENST00000593099 MYCNP04198 464 aaPredicted RBP11.38□□□□□ -0.59
LIG3-216ENST00000593099 PRR5LQ6MZQ0 368 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 CELF1Q92879 486 aaKnown RBP11.38□□□□□ -0.59
LIG3-216ENST00000593099 TBC1D32Q96NH3 1257 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 SGSM2O43147 1006 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 ZNF34Q8IZ26 560 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 ARPP21Q9UBL0 812 aaPredicted RBP11.38□□□□□ -0.59
LIG3-216ENST00000593099 CEP89Q96ST8 783 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 BEGAINQ9BUH8 593 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 MINPP1Q9UNW1 487 aa11.38□□□□□ -0.59
LIG3-216ENST00000593099 USP42Q9H9J4 1324 aaKnown RBP11.37□□□□□ -0.59
LIG3-216ENST00000593099 TCP10L2B9ZVM9 353 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 PRDM1O75626 825 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 CHMP4BP1P59074 171 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 EPHA10Q5JZY3 1008 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 RRP36Q96EU6 259 aaKnown RBP11.37□□□□□ -0.59
LIG3-216ENST00000593099 B4E1Z4 1266 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 HEATR3Q7Z4Q2 680 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 UBE3CQ15386 1083 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 CHST3Q7LGC8 479 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 TMEM87BQ96K49 555 aa11.37□□□□□ -0.59
LIG3-216ENST00000593099 CRAMP1Q96RY5 1269 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms