RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 TMEM57Q8N5G2 664 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 DENND2AQ9ULE3 1009 aa13.6□□□□□ -0.23
LIG3-214ENST00000592244 SCAF8Q9UPN6 1271 aaKnown RBP13.6□□□□□ -0.23
LIG3-214ENST00000592244 UBE2Q2LH0YL09 131 aa13.59□□□□□ -0.23
LIG3-214ENST00000592244 KIF23Q02241 960 aaPredicted RBP13.59□□□□□ -0.23
LIG3-214ENST00000592244 MVPQ14764 893 aaKnown RBP13.59□□□□□ -0.23
LIG3-214ENST00000592244 HOOK2Q96ED9 719 aa13.59□□□□□ -0.23
LIG3-214ENST00000592244 SAGE1Q9NXZ1 904 aa13.59□□□□□ -0.23
LIG3-214ENST00000592244 PA2G4Q9UQ80 394 aaKnown RBP13.59□□□□□ -0.23
LIG3-214ENST00000592244 PAPPA2Q9BXP8 1791 aa13.58□□□□□ -0.23
LIG3-214ENST00000592244 FAM155AB1AL88 458 aaPredicted RBP13.58□□□□□ -0.24
LIG3-214ENST00000592244 IREB2P48200 963 aaKnown RBP13.58□□□□□ -0.24
LIG3-214ENST00000592244 RASA3Q14644 834 aa13.58□□□□□ -0.24
LIG3-214ENST00000592244 SPDYE2Q495Y8 402 aa13.58□□□□□ -0.24
LIG3-214ENST00000592244 GORABQ5T7V8 394 aa13.58□□□□□ -0.24
LIG3-214ENST00000592244 RASAL3Q86YV0 1011 aa13.58□□□□□ -0.24
LIG3-214ENST00000592244 SLF2Q8IX21 1173 aa13.58□□□□□ -0.24
LIG3-214ENST00000592244 ZDHHC15Q96MV8 337 aa13.58□□□□□ -0.24
LIG3-214ENST00000592244 CHMP4BQ9H444 224 aaKnown RBP13.58□□□□□ -0.24
LIG3-214ENST00000592244 TDRD3Q9H7E2 651 aaKnown RBP13.58□□□□□ -0.24
LIG3-214ENST00000592244 ZNF70Q9UC06 446 aaPredicted RBP13.58□□□□□ -0.24
LIG3-214ENST00000592244 ANGEL1Q9UNK9 670 aaKnown RBP13.58□□□□□ -0.24
LIG3-214ENST00000592244 ZBTB22O15209 634 aa13.57□□□□□ -0.24
LIG3-214ENST00000592244 LDHBP07195 334 aaKnown RBP13.57□□□□□ -0.24
LIG3-214ENST00000592244 SREBF2Q12772 1141 aa13.57□□□□□ -0.24
LIG3-214ENST00000592244 OS9Q13438 667 aaPredicted RBP13.57□□□□□ -0.24
LIG3-214ENST00000592244 PRKG1Q13976 671 aa13.57□□□□□ -0.24
LIG3-214ENST00000592244 SPTY2D1Q68D10 685 aaPredicted RBP13.57□□□□□ -0.24
LIG3-214ENST00000592244 HHIPL2Q6UWX4 724 aa13.57□□□□□ -0.24
LIG3-214ENST00000592244 SLC10A4Q96EP9 437 aa13.57□□□□□ -0.24
LIG3-214ENST00000592244 THSD7BQ9C0I4 1608 aa13.57□□□□□ -0.24
LIG3-214ENST00000592244 A0A1B0GUL6 1792 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 A0A1B0GUL7 405 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 TFCP2Q12800 502 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 FKBP1CQ5VVH2 108 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 CCDC102BQ68D86 513 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 MOB2Q70IA6 237 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 NEUROD6Q96NK8 337 aa13.56□□□□□ -0.24
LIG3-214ENST00000592244 TCP10L2B9ZVM9 353 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 INHBEP58166 350 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 TIMM10P62072 90 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 MAP3K11Q16584 847 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 LDLRAD1Q5T700 205 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 CSRNP1Q96S65 589 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 TNNQ9UQP3 1299 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 PCDHAC2Q9Y5I4 1007 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 PDS5AQ29RF7 1337 aaKnown RBP13.55□□□□□ -0.24
LIG3-214ENST00000592244 SALL1Q9NSC2 1324 aa13.55□□□□□ -0.24
LIG3-214ENST00000592244 POLR2AP24928 1970 aaKnown RBP13.54□□□□□ -0.24
LIG3-214ENST00000592244 PNMA6EA0A0J9YXQ4 647 aa13.54□□□□□ -0.24
LIG3-214ENST00000592244 PHKA1P46020 1223 aa13.54□□□□□ -0.24
LIG3-214ENST00000592244 ATP8B2P98198 1209 aa13.54□□□□□ -0.24
LIG3-214ENST00000592244 NBPF12Q5TAG4 269 aaPredicted RBP13.54□□□□□ -0.24
LIG3-214ENST00000592244 FAM83AQ86UY5 434 aa13.54□□□□□ -0.24
LIG3-214ENST00000592244 DZIP1Q86YF9 867 aaKnown RBP13.54□□□□□ -0.24
LIG3-214ENST00000592244 ANKRD13AQ8IZ07 590 aa13.54□□□□□ -0.24
LIG3-214ENST00000592244 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.54□□□□□ -0.24
LIG3-214ENST00000592244 XAGE2Q96GT9 111 aa13.54□□□□□ -0.24
LIG3-214ENST00000592244 MANSC4A6NHS7 340 aaPredicted RBP13.53□□□□□ -0.24
LIG3-214ENST00000592244 ZBTB7BO15156 539 aaPredicted RBP13.53□□□□□ -0.24
LIG3-214ENST00000592244 SURF6O75683 361 aaKnown RBP13.53□□□□□ -0.24
LIG3-214ENST00000592244 TRPA1O75762 1119 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 ALDH1A1P00352 501 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 UQCRFS1P1P0C7P4 283 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 ZBTB48P10074 688 aaPredicted RBP13.53□□□□□ -0.24
LIG3-214ENST00000592244 GRIK5Q16478 980 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 ZIC5Q96T25 663 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 GPR108Q9NPR9 543 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 TSKSQ9UJT2 592 aa13.53□□□□□ -0.24
LIG3-214ENST00000592244 ZNF646O15015 1829 aaPredicted RBP13.53□□□□□ -0.24
LIG3-214ENST00000592244 ADORA1P30542 326 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 POLA2Q14181 598 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 HSP90AB4PQ58FF6 505 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 CCDC158Q5M9N0 1113 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 SPRYD7Q5W111 196 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 DCAF15Q66K64 600 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 OTUD7BQ6GQQ9 843 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 APOBEC3HQ6NTF7 200 aaKnown RBP13.52□□□□□ -0.25
LIG3-214ENST00000592244 ERC1Q8IUD2 1116 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 SSH3Q8TE77 659 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 RNF186Q9NXI6 227 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 ABCF2Q9UG63 623 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 RCAN3Q9UKA8 241 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 CSADQ9Y600 493 aa13.52□□□□□ -0.25
LIG3-214ENST00000592244 RLBP1P12271 317 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 PRDX5P30044 214 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 TM4SF4P48230 202 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 GSTO1P78417 241 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 RASGRF1Q13972 1273 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 ERICH6Q7L0X2 663 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 TMEM39BQ9GZU3 492 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 DDX19BQ9UMR2 479 aa13.51□□□□□ -0.25
LIG3-214ENST00000592244 HMMRO75330 724 aa13.5□□□□□ -0.25
LIG3-214ENST00000592244 USP2O75604 605 aaPredicted RBP13.5□□□□□ -0.25
LIG3-214ENST00000592244 CAPN15O75808 1086 aa13.5□□□□□ -0.25
LIG3-214ENST00000592244 LDHCP07864 332 aa13.5□□□□□ -0.25
LIG3-214ENST00000592244 MKRN3Q13064 507 aaKnown RBP13.5□□□□□ -0.25
LIG3-214ENST00000592244 C1orf115Q9H7X2 142 aa13.5□□□□□ -0.25
LIG3-214ENST00000592244 USP40Q9NVE5 1235 aa13.5□□□□□ -0.25
LIG3-214ENST00000592244 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms